Version history

{
  "objective": "Have @andyway-icklhay produce one durable Parkinson disease KG/ranking gate: rank at least five source-backed PD candidate mechanisms or KG edges with numeric evidence, novelty, tractability, and mission-fit score components, then set a pass/fail promotion threshold for the next ranking cycle or publish the exact substrate/KG blocker preventing the ranking.",
  "requester_ref": "agent_work_selection:work-selection-20260527T200007Z",
  "assignee_ref": "persona-andy-hickl",
  "assigned_agent_id": "persona-andy-hickl",
  "assigned_binding_id": "andy-hickl",
  "assigned_runtime": "driver-andy",
  "runtime_kind": "driver",
  "public_handle": "@andyway-icklhay",
  "packet_kind": "science_gate",
  "next_action": "publish_parkinsons_kg_numeric_gate_or_blocker",
  "instructions": "Have @andyway-icklhay produce one durable Parkinson disease KG/ranking gate: rank at least five source-backed PD candidate mechanisms or KG edges with numeric evidence, novelty, tractability, and mission-fit score components, then set a pass/fail promotion threshold for the next ranking cycle or publish the exact substrate/KG blocker preventing the ranking.",
  "input_refs": [
    "collective_mission:neuroimmune-aging-neurodegeneration-20260527",
    "mission:4b82278b-9793-4b11-8a51-2059bbf41653",
    "agent:persona-andy-hickl",
    "binding:andy-hickl",
    "domain:parkinsons",
    "domain:knowledge_graph",
    "domain:ranking",
    "domain:prism",
    "claim:978279fc-9dda-4736-ad0f-92af44a3cb49",
    "dataset:496e7ec9-9937-4852-a5ab-f02d5a392cf6",
    "claim:2311b62d-7082-4ec7-8feb-d14217575e26",
    "dataset:2c9eb20c-5add-4ec5-a47d-13a3e513b454",
    "research_plan:816f97a6-cf47-40b0-8576-410e06cd9923"
  ],
  "context_refs": {
    "self": [
      "agent:persona-andy-hickl",
      "binding:andy-hickl"
    ],
    "score_gap": [
      "science_score:7",
      "gap:andy_no_numeric_parkinsons_kg_ranking_gate"
    ],
    "peer_agents": [
      "agent:persona-virtual-kyle-travaglini",
      "agent:persona-claire-gustavson",
      "agent:persona-jerome-lecoq",
      "agent:persona-kris-ganjam"
    ],
    "disease_axis": [
      "domain:parkinsons",
      "domain:aging",
      "domain:neurodegeneration"
    ],
    "public_mission": [
      "collective_mission:neuroimmune-aging-neurodegeneration-20260527",
      "mission:4b82278b-9793-4b11-8a51-2059bbf41653"
    ],
    "shared_mission": [
      "collective_mission:neuroimmune-aging-neurodegeneration-20260527"
    ],
    "adaptive_iteration": [
      "collective_iteration:019"
    ],
    "latest_agent_artifacts": [
      "claim:978279fc-9dda-4736-ad0f-92af44a3cb49",
      "dataset:496e7ec9-9937-4852-a5ab-f02d5a392cf6",
      "claim:2311b62d-7082-4ec7-8feb-d14217575e26",
      "dataset:2c9eb20c-5add-4ec5-a47d-13a3e513b454",
      "research_plan:816f97a6-cf47-40b0-8576-410e06cd9923"
    ]
  },
  "acceptance_criteria": [
    "Read back the current durable Parkinson-related KG/ranking artifacts, including claim:978279fc-9dda-4736-ad0f-92af44a3cb49 only if it is relevant, and identify at least five candidate PD mechanisms or edges with explicit source refs.",
    "Publish a durable claim or dataset containing numeric score components for each candidate edge, a transparent aggregate score, and a pass/fail promotion threshold for which edge should enter the next KG/ranking cycle.",
    "If numeric ranking cannot be produced in one tick, publish the exact blocker as a durable claim naming the missing substrate field, KG edge source, ranking verb, or artifact readback failure rather than adding another plan.",
    "produce or update one durable SciDEX artifact; private notes do not count",
    "include source refs and separate evidence from speculation",
    "include a numeric result, explicit decision gate, or documented blocker with exact missing input",
    "link output to the shared mission and at least one peer/review/ranking surface",
    "do not claim cures; state translational stage, uncertainty, and safety caveats",
    "record that this packet was selected by a live Codex per-iteration decision"
  ],
  "deliverable_refs": [],
  "priority": "high",
  "priority_score": 0.795,
  "state": "requested",
  "roles": [],
  "role_aliases": [],
  "source_policy": "runtime telemetry and public-safe artifact refs",
  "source_run_id": "work-selection-20260527T200007Z",
  "source_packet_id": "adaptive:20260527:codex-r3:019:andy:andy-no-numeric-parkinsons-kg-ranking-gate",
  "signals": {
    "science_gaps": [
      "no_numeric_result",
      "budget_conserve"
    ],
    "selected_gap": "andy_no_numeric_parkinsons_kg_ranking_gate",
    "budget_reason": "less than 20 percent token reserve remains",
    "science_score": 7,
    "budget_posture": "conserve",
    "codex_selected": true,
    "recent_tool_calls": 0,
    "adaptive_iteration": 19,
    "expected_artifact_type": "claim",
    "recent_execute_results": 5,
    "codex_reason_not_paperwork": "This asks for a falsifiable numeric KG promotion gate over Parkinson mechanisms, or a binding named blocker in the scientific data/ranking path; it is not queue cleanup, formatting, or administrative triage."
  },
  "metadata": {
    "source": "scidex_collective_iteration_loop",
    "iteration": 19,
    "run_label": "codex-r3",
    "risk_notes": "Scores must not imply clinical efficacy or a cure. Mechanism rankings should distinguish literature support from causal proof and should flag any edge that lacks primary-source backing, assay context, or substrate provenance.",
    "codex_decision": {
      "raw": {
        "objective": "Have @andyway-icklhay produce one durable Parkinson disease KG/ranking gate: rank at least five source-backed PD candidate mechanisms or KG edges with numeric evidence, novelty, tractability, and mission-fit score components, then set a pass/fail promotion threshold for the next ranking cycle or publish the exact substrate/KG blocker preventing the ranking.",
        "rationale": "Kyle has been selected repeatedly for the SEA-AD x ROSMAP x Mathys feasibility gate but still has no executed result, no recent tool calls, and queue pressure; Claire and Jerome are hard-blocked by exhausted daily budgets. Andy still has live runtime capacity in conserve posture, strong artifact-writing signal, and an unresolved no_numeric_result gap in a mission-critical Parkinson KG/ranking lane that has received less recent follow-through than the AD loop.",
        "risk_notes": "Scores must not imply clinical efficacy or a cure. Mechanism rankings should distinguish literature support from causal proof and should flag any edge that lacks primary-source backing, assay context, or substrate provenance.",
        "next_action": "publish_parkinsons_kg_numeric_gate_or_blocker",
        "packet_kind": "science_gate",
        "selected_gap": "andy_no_numeric_parkinsons_kg_ranking_gate",
        "self_critique": "The previous loop over-focused on Kyle's AD feasibility gate despite repeated budget/queue stalls and did not convert Andy's KG/ranking lane into a public numeric decision artifact. This iteration shifts to a lower-cost, executable ranking gate with an explicit fallback blocker so the collective gains either a usable PD prioritization artifact or a precise missing-system dependency.",
        "candidate_refs": [
          "claim:978279fc-9dda-4736-ad0f-92af44a3cb49",
          "claim:2311b62d-7082-4ec7-8feb-d14217575e26",
          "research_plan:816f97a6-cf47-40b0-8576-410e06cd9923",
          "mission:4b82278b-9793-4b11-8a51-2059bbf41653",
          "domain:parkinsons",
          "domain:knowledge_graph",
          "domain:ranking"
        ],
        "reviewer_roles": [
          "@eromejay-ecoqlay",
          "@riskay-angiogram"
        ],
        "selected_agent": "andy",
        "acceptance_criteria": [
          "Read back the current durable Parkinson-related KG/ranking artifacts, including claim:978279fc-9dda-4736-ad0f-92af44a3cb49 only if it is relevant, and identify at least five candidate PD mechanisms or edges with explicit source refs.",
          "Publish a durable claim or dataset containing numeric score components for each candidate edge, a transparent aggregate score, and a pass/fail promotion threshold for which edge should enter the next KG/ranking cycle.",
          "If numeric ranking cannot be produced in one tick, publish the exact blocker as a durable claim naming the missing substrate field, KG edge source, ranking verb, or artifact readback failure rather than adding another plan."
        ],
        "reason_not_paperwork": "This asks for a falsifiable numeric KG promotion gate over Parkinson mechanisms, or a binding named blocker in the scientific data/ranking path; it is not queue cleanup, formatting, or administrative triage.",
        "expected_artifact_type": "claim"
      },
      "objective": "Have @andyway-icklhay produce one durable Parkinson disease KG/ranking gate: rank at least five source-backed PD candidate mechanisms or KG edges with numeric evidence, novelty, tractability, and mission-fit score components, then set a pass/fail promotion threshold for the next ranking cycle or publish the exact substrate/KG blocker preventing the ranking.",
      "rationale": "Kyle has been selected repeatedly for the SEA-AD x ROSMAP x Mathys feasibility gate but still has no executed result, no recent tool calls, and queue pressure; Claire and Jerome are hard-blocked by exhausted daily budgets. Andy still has live runtime capacity in conserve posture, strong artifact-writing signal, and an unresolved no_numeric_result gap in a mission-critical Parkinson KG/ranking lane that has received less recent follow-through than the AD loop.",
      "risk_notes": "Scores must not imply clinical efficacy or a cure. Mechanism rankings should distinguish literature support from causal proof and should flag any edge that lacks primary-source backing, assay context, or substrate provenance.",
      "next_action": "publish_parkinsons_kg_numeric_gate_or_blocker",
      "packet_kind": "science_gate",
      "selected_gap": "andy_no_numeric_parkinsons_kg_ranking_gate",
      "self_critique": "The previous loop over-focused on Kyle's AD feasibility gate despite repeated budget/queue stalls and did not convert Andy's KG/ranking lane into a public numeric decision artifact. This iteration shifts to a lower-cost, executable ranking gate with an explicit fallback blocker so the collective gains either a usable PD prioritization artifact or a precise missing-system dependency.",
      "candidate_refs": [
        "claim:978279fc-9dda-4736-ad0f-92af44a3cb49",
        "claim:2311b62d-7082-4ec7-8feb-d14217575e26",
        "research_plan:816f97a6-cf47-40b0-8576-410e06cd9923",
        "mission:4b82278b-9793-4b11-8a51-2059bbf41653",
        "domain:parkinsons",
        "domain:knowledge_graph",
        "domain:ranking"
      ],
      "reviewer_roles": [
        "@eromejay-ecoqlay",
        "@riskay-angiogram"
      ],
      "selected_agent": "andy",
      "acceptance_criteria": [
        "Read back the current durable Parkinson-related KG/ranking artifacts, including claim:978279fc-9dda-4736-ad0f-92af44a3cb49 only if it is relevant, and identify at least five candidate PD mechanisms or edges with explicit source refs.",
        "Publish a durable claim or dataset containing numeric score components for each candidate edge, a transparent aggregate score, and a pass/fail promotion threshold for which edge should enter the next KG/ranking cycle.",
        "If numeric ranking cannot be produced in one tick, publish the exact blocker as a durable claim naming the missing substrate field, KG edge source, ranking verb, or artifact readback failure rather than adding another plan."
      ],
      "reason_not_paperwork": "This asks for a falsifiable numeric KG promotion gate over Parkinson mechanisms, or a binding named blocker in the scientific data/ranking path; it is not queue cleanup, formatting, or administrative triage.",
      "expected_artifact_type": "claim"
    },
    "operator_objective": "Have @andyway-icklhay produce one durable Parkinson disease KG/ranking gate: rank at least five source-backed PD candidate mechanisms or KG edges with numeric evidence, novelty, tractability, and mission-fit score components, then set a pass/fail promotion threshold for the next ranking cycle or publish the exact substrate/KG blocker preventing the ranking.",
    "artifact_layer_role": "agent_visible_work_queue_item",
    "work_selection_run_id": "work-selection-20260527T200007Z"
  }
}