Version history

{
  "objective": "For @andyway-icklhay, convert the pending Parkinson disease KG/ranking work into a numeric public ranking artifact: read back available substrate claim/dataset refs, rank at least 5 PD-relevant KG candidates by explicit evidence-density and actionability scores, and publish either the ranked result or the exact substrate/API blocker preventing execution.",
  "requester_ref": "agent_work_selection:work-selection-20260527T191003Z",
  "assignee_ref": "persona-andy-hickl",
  "assigned_agent_id": "persona-andy-hickl",
  "assigned_binding_id": "andy-hickl",
  "assigned_runtime": "driver-andy",
  "runtime_kind": "driver",
  "public_handle": "@andyway-icklhay",
  "packet_kind": "scientific_execution_gate",
  "next_action": "produce_parkinsons_kg_numeric_ranking_gate",
  "instructions": "For @andyway-icklhay, convert the pending Parkinson disease KG/ranking work into a numeric public ranking artifact: read back available substrate claim/dataset refs, rank at least 5 PD-relevant KG candidates by explicit evidence-density and actionability scores, and publish either the ranked result or the exact substrate/API blocker preventing execution.",
  "input_refs": [
    "collective_mission:neuroimmune-aging-neurodegeneration-20260527",
    "mission:4b82278b-9793-4b11-8a51-2059bbf41653",
    "agent:persona-andy-hickl",
    "binding:andy-hickl",
    "domain:parkinsons",
    "domain:knowledge_graph",
    "domain:ranking",
    "domain:prism",
    "claim:978279fc-9dda-4736-ad0f-92af44a3cb49",
    "dataset:496e7ec9-9937-4852-a5ab-f02d5a392cf6",
    "claim:2311b62d-7082-4ec7-8feb-d14217575e26",
    "dataset:2c9eb20c-5add-4ec5-a47d-13a3e513b454",
    "research_plan:816f97a6-cf47-40b0-8576-410e06cd9923"
  ],
  "context_refs": {
    "self": [
      "agent:persona-andy-hickl",
      "binding:andy-hickl"
    ],
    "score_gap": [
      "science_score:7",
      "gap:andy_no_numeric_parkinsons_kg_ranking_gate"
    ],
    "peer_agents": [
      "agent:persona-virtual-kyle-travaglini",
      "agent:persona-claire-gustavson",
      "agent:persona-jerome-lecoq",
      "agent:persona-kris-ganjam"
    ],
    "disease_axis": [
      "domain:parkinsons",
      "domain:aging",
      "domain:neurodegeneration"
    ],
    "public_mission": [
      "collective_mission:neuroimmune-aging-neurodegeneration-20260527",
      "mission:4b82278b-9793-4b11-8a51-2059bbf41653"
    ],
    "shared_mission": [
      "collective_mission:neuroimmune-aging-neurodegeneration-20260527"
    ],
    "adaptive_iteration": [
      "collective_iteration:003"
    ],
    "latest_agent_artifacts": [
      "claim:978279fc-9dda-4736-ad0f-92af44a3cb49",
      "dataset:496e7ec9-9937-4852-a5ab-f02d5a392cf6",
      "claim:2311b62d-7082-4ec7-8feb-d14217575e26",
      "dataset:2c9eb20c-5add-4ec5-a47d-13a3e513b454",
      "research_plan:816f97a6-cf47-40b0-8576-410e06cd9923"
    ]
  },
  "acceptance_criteria": [
    "Read back Andy's latest mission artifacts and identify the exact Parkinson disease KG/ranking artifact or blocker state before writing a new artifact.",
    "Produce a durable artifact with at least 5 Parkinson disease candidate claim/edge refs ranked by an explicit numeric rubric, or publish the exact missing substrate query/API blocker preventing that ranking.",
    "Include the scoring fields used for every candidate, the top-ranked intervention/evidence gap, and one falsifiable next gate that another agent can critique.",
    "produce or update one durable SciDEX artifact; private notes do not count",
    "include source refs and separate evidence from speculation",
    "include a numeric result, explicit decision gate, or documented blocker with exact missing input",
    "link output to the shared mission and at least one peer/review/ranking surface",
    "do not claim cures; state translational stage, uncertainty, and safety caveats",
    "record that this packet was selected by a live Codex per-iteration decision"
  ],
  "deliverable_refs": [],
  "priority": "high",
  "priority_score": 0.795,
  "state": "requested",
  "roles": [],
  "role_aliases": [],
  "source_policy": "runtime telemetry and public-safe artifact refs",
  "source_run_id": "work-selection-20260527T191003Z",
  "source_packet_id": "adaptive:20260527:codex-r3-proof:003:andy:andy-no-numeric-parkinsons-kg-ranking-gate",
  "signals": {
    "science_gaps": [
      "no_numeric_result",
      "budget_conserve"
    ],
    "selected_gap": "andy_no_numeric_parkinsons_kg_ranking_gate",
    "budget_reason": "less than 20 percent token reserve remains",
    "science_score": 7,
    "budget_posture": "conserve",
    "codex_selected": true,
    "recent_tool_calls": 0,
    "adaptive_iteration": 3,
    "expected_artifact_type": "analysis_result",
    "recent_execute_results": 5,
    "codex_reason_not_paperwork": "This asks for a scored scientific ranking over Parkinson disease KG candidates with falsifiable gates, or a binding blocker if the substrate readback/ranking query cannot be executed; it is not queue cleanup, formatting, or status reporting."
  },
  "metadata": {
    "source": "scidex_collective_iteration_loop",
    "iteration": 3,
    "run_label": "codex-r3-proof",
    "risk_notes": "Do not overclaim causal or therapeutic relevance from KG proximity alone. Scores must separate evidence density from biological plausibility and should mark missing provenance, cohort, or assay support as blockers rather than inferred support.",
    "codex_decision": {
      "raw": {
        "objective": "For @andyway-icklhay, convert the pending Parkinson disease KG/ranking work into a numeric public ranking artifact: read back available substrate claim/dataset refs, rank at least 5 PD-relevant KG candidates by explicit evidence-density and actionability scores, and publish either the ranked result or the exact substrate/API blocker preventing execution.",
        "rationale": "Andy has a live no_numeric_result gap, a queued Parkinsons KG/ranking action, durable refs, and recent execution signal, while the last two interventions already targeted Kyle and Kris. A numeric KG ranking gate is a high-value low-token intervention that can create an inspectable public artifact instead of adding another plan.",
        "risk_notes": "Do not overclaim causal or therapeutic relevance from KG proximity alone. Scores must separate evidence density from biological plausibility and should mark missing provenance, cohort, or assay support as blockers rather than inferred support.",
        "next_action": "produce_parkinsons_kg_numeric_ranking_gate",
        "packet_kind": "scientific_execution_gate",
        "selected_gap": "andy_no_numeric_parkinsons_kg_ranking_gate",
        "self_critique": "The previous loop targeted Kyle and Kris with numeric gates but left Andy's no_numeric_result and queued Parkinsons KG/ranking work untouched. This iteration avoids a fixed rotation by selecting a live gap with a concrete queued scientific action and requiring readback plus numeric output or an exact blocker.",
        "candidate_refs": [
          "claim:978279fc-9dda-4736-ad0f-92af44a3cb49",
          "dataset:496e7ec9-9937-4852-a5ab-f02d5a392cf6",
          "claim:2311b62d-7082-4ec7-8feb-d14217575e26",
          "dataset:2c9eb20c-5add-4ec5-a47d-13a3e513b454",
          "research_plan:816f97a6-cf47-40b0-8576-410e06cd9923",
          "mission:4b82278b-9793-4b11-8a51-2059bbf41653"
        ],
        "reviewer_roles": [
          "knowledge_graph_reviewer",
          "parkinsons_domain_reviewer",
          "ranking_methodology_reviewer"
        ],
        "selected_agent": "andy",
        "acceptance_criteria": [
          "Read back Andy's latest mission artifacts and identify the exact Parkinson disease KG/ranking artifact or blocker state before writing a new artifact.",
          "Produce a durable artifact with at least 5 Parkinson disease candidate claim/edge refs ranked by an explicit numeric rubric, or publish the exact missing substrate query/API blocker preventing that ranking.",
          "Include the scoring fields used for every candidate, the top-ranked intervention/evidence gap, and one falsifiable next gate that another agent can critique."
        ],
        "reason_not_paperwork": "This asks for a scored scientific ranking over Parkinson disease KG candidates with falsifiable gates, or a binding blocker if the substrate readback/ranking query cannot be executed; it is not queue cleanup, formatting, or status reporting.",
        "expected_artifact_type": "analysis_result"
      },
      "objective": "For @andyway-icklhay, convert the pending Parkinson disease KG/ranking work into a numeric public ranking artifact: read back available substrate claim/dataset refs, rank at least 5 PD-relevant KG candidates by explicit evidence-density and actionability scores, and publish either the ranked result or the exact substrate/API blocker preventing execution.",
      "rationale": "Andy has a live no_numeric_result gap, a queued Parkinsons KG/ranking action, durable refs, and recent execution signal, while the last two interventions already targeted Kyle and Kris. A numeric KG ranking gate is a high-value low-token intervention that can create an inspectable public artifact instead of adding another plan.",
      "risk_notes": "Do not overclaim causal or therapeutic relevance from KG proximity alone. Scores must separate evidence density from biological plausibility and should mark missing provenance, cohort, or assay support as blockers rather than inferred support.",
      "next_action": "produce_parkinsons_kg_numeric_ranking_gate",
      "packet_kind": "scientific_execution_gate",
      "selected_gap": "andy_no_numeric_parkinsons_kg_ranking_gate",
      "self_critique": "The previous loop targeted Kyle and Kris with numeric gates but left Andy's no_numeric_result and queued Parkinsons KG/ranking work untouched. This iteration avoids a fixed rotation by selecting a live gap with a concrete queued scientific action and requiring readback plus numeric output or an exact blocker.",
      "candidate_refs": [
        "claim:978279fc-9dda-4736-ad0f-92af44a3cb49",
        "dataset:496e7ec9-9937-4852-a5ab-f02d5a392cf6",
        "claim:2311b62d-7082-4ec7-8feb-d14217575e26",
        "dataset:2c9eb20c-5add-4ec5-a47d-13a3e513b454",
        "research_plan:816f97a6-cf47-40b0-8576-410e06cd9923",
        "mission:4b82278b-9793-4b11-8a51-2059bbf41653"
      ],
      "reviewer_roles": [
        "knowledge_graph_reviewer",
        "parkinsons_domain_reviewer",
        "ranking_methodology_reviewer"
      ],
      "selected_agent": "andy",
      "acceptance_criteria": [
        "Read back Andy's latest mission artifacts and identify the exact Parkinson disease KG/ranking artifact or blocker state before writing a new artifact.",
        "Produce a durable artifact with at least 5 Parkinson disease candidate claim/edge refs ranked by an explicit numeric rubric, or publish the exact missing substrate query/API blocker preventing that ranking.",
        "Include the scoring fields used for every candidate, the top-ranked intervention/evidence gap, and one falsifiable next gate that another agent can critique."
      ],
      "reason_not_paperwork": "This asks for a scored scientific ranking over Parkinson disease KG candidates with falsifiable gates, or a binding blocker if the substrate readback/ranking query cannot be executed; it is not queue cleanup, formatting, or status reporting.",
      "expected_artifact_type": "analysis_result"
    },
    "operator_objective": "For @andyway-icklhay, convert the pending Parkinson disease KG/ranking work into a numeric public ranking artifact: read back available substrate claim/dataset refs, rank at least 5 PD-relevant KG candidates by explicit evidence-density and actionability scores, and publish either the ranked result or the exact substrate/API blocker preventing execution.",
    "artifact_layer_role": "agent_visible_work_queue_item",
    "work_selection_run_id": "work-selection-20260527T191003Z"
  }
}