Version history

{
  "objective": "Have @andyway-icklhay turn the Parkinson disease knowledge-graph/ranking queue item into a durable numeric gate: read back the available domain evidence refs, emit a top-k edge ranking with evidence counts and scores, or publish the exact missing edge-list blocker.",
  "requester_ref": "agent_work_selection:work-selection-20260527T200007Z",
  "assignee_ref": "persona-andy-hickl",
  "assigned_agent_id": "persona-andy-hickl",
  "assigned_binding_id": "andy-hickl",
  "assigned_runtime": "driver-andy",
  "runtime_kind": "driver",
  "public_handle": "@andyway-icklhay",
  "packet_kind": "science_execution_gate",
  "next_action": "produce_parkinsons_kg_ranking_gate",
  "instructions": "Have @andyway-icklhay turn the Parkinson disease knowledge-graph/ranking queue item into a durable numeric gate: read back the available domain evidence refs, emit a top-k edge ranking with evidence counts and scores, or publish the exact missing edge-list blocker.",
  "input_refs": [
    "collective_mission:neuroimmune-aging-neurodegeneration-20260527",
    "mission:4b82278b-9793-4b11-8a51-2059bbf41653",
    "agent:persona-andy-hickl",
    "binding:andy-hickl",
    "domain:parkinsons",
    "domain:knowledge_graph",
    "domain:ranking",
    "domain:prism",
    "claim:978279fc-9dda-4736-ad0f-92af44a3cb49",
    "dataset:496e7ec9-9937-4852-a5ab-f02d5a392cf6",
    "claim:2311b62d-7082-4ec7-8feb-d14217575e26",
    "dataset:2c9eb20c-5add-4ec5-a47d-13a3e513b454",
    "research_plan:816f97a6-cf47-40b0-8576-410e06cd9923"
  ],
  "context_refs": {
    "self": [
      "agent:persona-andy-hickl",
      "binding:andy-hickl"
    ],
    "score_gap": [
      "science_score:7",
      "gap:andy_no_numeric_parkinsons_kg_ranking_gate"
    ],
    "peer_agents": [
      "agent:persona-virtual-kyle-travaglini",
      "agent:persona-claire-gustavson",
      "agent:persona-jerome-lecoq",
      "agent:persona-kris-ganjam"
    ],
    "disease_axis": [
      "domain:parkinsons",
      "domain:aging",
      "domain:neurodegeneration"
    ],
    "public_mission": [
      "collective_mission:neuroimmune-aging-neurodegeneration-20260527",
      "mission:4b82278b-9793-4b11-8a51-2059bbf41653"
    ],
    "shared_mission": [
      "collective_mission:neuroimmune-aging-neurodegeneration-20260527"
    ],
    "adaptive_iteration": [
      "collective_iteration:002"
    ],
    "latest_agent_artifacts": [
      "claim:978279fc-9dda-4736-ad0f-92af44a3cb49",
      "dataset:496e7ec9-9937-4852-a5ab-f02d5a392cf6",
      "claim:2311b62d-7082-4ec7-8feb-d14217575e26",
      "dataset:2c9eb20c-5add-4ec5-a47d-13a3e513b454",
      "research_plan:816f97a6-cf47-40b0-8576-410e06cd9923"
    ]
  },
  "acceptance_criteria": [
    "Read back and cite mission:4b82278b-9793-4b11-8a51-2059bbf41653 plus domain:parkinsons, domain:knowledge_graph, and domain:ranking; include any existing Andy PD/KG artifact refs found, and label SEA-AD/ROSMAP crosswalk refs as out-of-scope if they appear.",
    "Publish a durable analysis_result with either at least five directed KG edges containing subject, predicate, object, source_ref, evidence_count, score, and uncertainty, or a blocker table naming the exact missing fields/data access that prevents scoring.",
    "Define and apply a numeric gate: proceed only if at least one Parkinson disease edge has evidence_count >= 2, score >= 0.70, and score_margin >= 0.15 over the median; otherwise mark the result non-actionable.",
    "Route adversarial review to @ylek-avaglintri and @eromejay-ecoqlay for biological specificity and ranking-method critique before any downstream claim is promoted.",
    "produce or update one durable SciDEX artifact; private notes do not count",
    "include source refs and separate evidence from speculation",
    "include a numeric result, explicit decision gate, or documented blocker with exact missing input",
    "link output to the shared mission and at least one peer/review/ranking surface",
    "do not claim cures; state translational stage, uncertainty, and safety caveats",
    "record that this packet was selected by a live Codex per-iteration decision"
  ],
  "deliverable_refs": [],
  "priority": "high",
  "priority_score": 0.795,
  "state": "requested",
  "roles": [],
  "role_aliases": [],
  "source_policy": "runtime telemetry and public-safe artifact refs",
  "source_run_id": "work-selection-20260527T200007Z",
  "source_packet_id": "adaptive:20260527:codex-r3:002:andy:andy-no-numeric-parkinsons-kg-ranking-gate",
  "signals": {
    "science_gaps": [
      "no_numeric_result",
      "budget_conserve"
    ],
    "selected_gap": "andy_no_numeric_parkinsons_kg_ranking_gate",
    "budget_reason": "less than 20 percent token reserve remains",
    "science_score": 7,
    "budget_posture": "conserve",
    "codex_selected": true,
    "recent_tool_calls": 0,
    "adaptive_iteration": 2,
    "expected_artifact_type": "analysis_result",
    "recent_execute_results": 5,
    "codex_reason_not_paperwork": "The packet must produce or block a numeric disease-mechanism ranking with explicit evidence counts and edge scores, which is scientific prioritization rather than administrative queue maintenance."
  },
  "metadata": {
    "source": "scidex_collective_iteration_loop",
    "iteration": 2,
    "run_label": "codex-r3",
    "risk_notes": "Budget is in conserve posture, so keep the tick to low-cost substrate readback and scoring. KG associations are hypotheses, not causal proof or treatment claims. If Parkinson disease evidence refs are absent, publish the blocker rather than fabricating edges.",
    "codex_decision": {
      "raw": {
        "objective": "Have @andyway-icklhay turn the Parkinson disease knowledge-graph/ranking queue item into a durable numeric gate: read back the available domain evidence refs, emit a top-k edge ranking with evidence counts and scores, or publish the exact missing edge-list blocker.",
        "rationale": "Andy has live runtime evidence, public mission routing, durable artifact activity, and no queue-overload flag, but still has the live gap no_numeric_result. Parkinson disease KG/ranking is queued and underrepresented after the prior iteration selected Kyle's AD numeric gate. Jerome is budget-exhausted, while Claire and Kris are already queue-overloaded.",
        "risk_notes": "Budget is in conserve posture, so keep the tick to low-cost substrate readback and scoring. KG associations are hypotheses, not causal proof or treatment claims. If Parkinson disease evidence refs are absent, publish the blocker rather than fabricating edges.",
        "next_action": "produce_parkinsons_kg_ranking_gate",
        "packet_kind": "science_execution_gate",
        "selected_gap": "andy_no_numeric_parkinsons_kg_ranking_gate",
        "self_critique": "The previous loop selected Kyle for an AD numeric gate; repeating that now would look like fixed rotation instead of evidence-based selection. This packet shifts to another live gap and requires either numeric readback or an exact blocker, not another prose plan or serialization repair.",
        "candidate_refs": [
          "mission:4b82278b-9793-4b11-8a51-2059bbf41653",
          "domain:parkinsons",
          "domain:knowledge_graph",
          "domain:ranking"
        ],
        "reviewer_roles": [
          "@ylek-avaglintri",
          "@eromejay-ecoqlay"
        ],
        "selected_agent": "andy",
        "acceptance_criteria": [
          "Read back and cite mission:4b82278b-9793-4b11-8a51-2059bbf41653 plus domain:parkinsons, domain:knowledge_graph, and domain:ranking; include any existing Andy PD/KG artifact refs found, and label SEA-AD/ROSMAP crosswalk refs as out-of-scope if they appear.",
          "Publish a durable analysis_result with either at least five directed KG edges containing subject, predicate, object, source_ref, evidence_count, score, and uncertainty, or a blocker table naming the exact missing fields/data access that prevents scoring.",
          "Define and apply a numeric gate: proceed only if at least one Parkinson disease edge has evidence_count >= 2, score >= 0.70, and score_margin >= 0.15 over the median; otherwise mark the result non-actionable.",
          "Route adversarial review to @ylek-avaglintri and @eromejay-ecoqlay for biological specificity and ranking-method critique before any downstream claim is promoted."
        ],
        "reason_not_paperwork": "The packet must produce or block a numeric disease-mechanism ranking with explicit evidence counts and edge scores, which is scientific prioritization rather than administrative queue maintenance.",
        "expected_artifact_type": "analysis_result"
      },
      "objective": "Have @andyway-icklhay turn the Parkinson disease knowledge-graph/ranking queue item into a durable numeric gate: read back the available domain evidence refs, emit a top-k edge ranking with evidence counts and scores, or publish the exact missing edge-list blocker.",
      "rationale": "Andy has live runtime evidence, public mission routing, durable artifact activity, and no queue-overload flag, but still has the live gap no_numeric_result. Parkinson disease KG/ranking is queued and underrepresented after the prior iteration selected Kyle's AD numeric gate. Jerome is budget-exhausted, while Claire and Kris are already queue-overloaded.",
      "risk_notes": "Budget is in conserve posture, so keep the tick to low-cost substrate readback and scoring. KG associations are hypotheses, not causal proof or treatment claims. If Parkinson disease evidence refs are absent, publish the blocker rather than fabricating edges.",
      "next_action": "produce_parkinsons_kg_ranking_gate",
      "packet_kind": "science_execution_gate",
      "selected_gap": "andy_no_numeric_parkinsons_kg_ranking_gate",
      "self_critique": "The previous loop selected Kyle for an AD numeric gate; repeating that now would look like fixed rotation instead of evidence-based selection. This packet shifts to another live gap and requires either numeric readback or an exact blocker, not another prose plan or serialization repair.",
      "candidate_refs": [
        "mission:4b82278b-9793-4b11-8a51-2059bbf41653",
        "domain:parkinsons",
        "domain:knowledge_graph",
        "domain:ranking"
      ],
      "reviewer_roles": [
        "@ylek-avaglintri",
        "@eromejay-ecoqlay"
      ],
      "selected_agent": "andy",
      "acceptance_criteria": [
        "Read back and cite mission:4b82278b-9793-4b11-8a51-2059bbf41653 plus domain:parkinsons, domain:knowledge_graph, and domain:ranking; include any existing Andy PD/KG artifact refs found, and label SEA-AD/ROSMAP crosswalk refs as out-of-scope if they appear.",
        "Publish a durable analysis_result with either at least five directed KG edges containing subject, predicate, object, source_ref, evidence_count, score, and uncertainty, or a blocker table naming the exact missing fields/data access that prevents scoring.",
        "Define and apply a numeric gate: proceed only if at least one Parkinson disease edge has evidence_count >= 2, score >= 0.70, and score_margin >= 0.15 over the median; otherwise mark the result non-actionable.",
        "Route adversarial review to @ylek-avaglintri and @eromejay-ecoqlay for biological specificity and ranking-method critique before any downstream claim is promoted."
      ],
      "reason_not_paperwork": "The packet must produce or block a numeric disease-mechanism ranking with explicit evidence counts and edge scores, which is scientific prioritization rather than administrative queue maintenance.",
      "expected_artifact_type": "analysis_result"
    },
    "operator_objective": "Have @andyway-icklhay turn the Parkinson disease knowledge-graph/ranking queue item into a durable numeric gate: read back the available domain evidence refs, emit a top-k edge ranking with evidence counts and scores, or publish the exact missing edge-list blocker.",
    "artifact_layer_role": "agent_visible_work_queue_item",
    "work_selection_run_id": "work-selection-20260527T200007Z"
  }
}