Details

scope
Mouse layer 2/3 barrel cortex and visual cortex; GCaMP6s + C1V1 all-optical
section_id
section_16
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_16_evidence_package.json
review_repo
ComputationalReviewRecurrence
section_ref
wiki_page:computationalreviewrecurrence-16-synthesis
source_kind
review_finding
source_path
evidence/section_16_evidence_package.json
source_span
We found that two-photon imaging at 920 nm decreases trial-by-trial photostimulation responses in targeted C1V1-expressing neurons-an effect that is exacerbated at shorter inter-stimulus intervals.
study_system
Mouse layer 2/3 barrel cortex and visual cortex; GCaMP6s + C1V1 all-optical
section_title
16. Synthesis — which computational claims the mouse-cortex E→E empirical record actually supports, where the bottleneck observations are, and what an inhibition-free, single-species, basic-research analytic framing misses
evidence_summary
Documents a previously under-recognised systematic confound in all-optical interrogation, directly bearing on cluster_14's topic of resolution limits and unrecognised biases of E→E tools.
review_bundle_ref
analysis_bundle:ab-d9c479db9be9
replication_status
replicated
review_package_ref
analysis_bundle:ab-d9c479db9be9
source_artifact_ref
wiki_page:computationalreviewrecurrence-16-synthesis
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_16_evidence_package.json
commit_sha
79ce062d54a924ce05953ec90aa9d26044d2b48f
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence
Raw fields (5)
claim_text
Two-photon GCaMP6s imaging at 920 nm desensitizes the red-shifted opsin C1V1 during all-optical interrogation of mouse layer 2/3 barrel and visual cortex, with the desensitization spreading beyond the targeted cells and worsening at shorter inter-stimulus intervals — a methodological caveat that introduces trial-by-trial variability in all-optical E→E experiments.
raw_fields
{
  "n": 0,
  "doi": "10.1117/1.nph.13.1.015007",
  "claim": "Two-photon GCaMP6s imaging at 920 nm desensitizes the red-shifted opsin C1V1 during all-optical interrogation of mouse layer 2/3 barrel and visual cortex, with the desensitization spreading beyond the targeted cells and worsening at shorter inter-stimulus intervals — a methodological caveat that introduces trial-by-trial variability in all-optical E→E experiments.",
  "cite_key": "Russell2026",
  "evidence": "Documents a previously under-recognised systematic confound in all-optical interrogation, directly bearing on cluster_14's topic of resolution limits and unrecognised biases of E→E tools.",
  "effect_size": null,
  "text_access": "abstract_only",
  "study_system": "Mouse layer 2/3 barrel cortex and visual cortex; GCaMP6s + C1V1 all-optical",
  "argument_role": "supporting",
  "replication_status": "replicated",
  "claim_source_sentence": "We found that two-photon imaging at 920 nm decreases trial-by-trial photostimulation responses in targeted C1V1-expressing neurons-an effect that is exacerbated at shorter inter-stimulus intervals.",
  "source_provenance_status": "non_substring_match",
  "replication_evidence_dois": [
    "10.1016/j.isci.2024.111152",
    "10.1016/j.xpro.2025.104342"
  ],
  "effect_size_source_sentence": null
}
source_refs
[
  "paper:paper-28eb3b5d2ad0"
]
evidence_refs
[
  {
    "ref": "paper:paper-28eb3b5d2ad0"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}

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