Version history

{
  "scope": "mouse V1 cortex; SMART-seq scRNA-seq",
  "claim_text": "Tasic et al. (2016) identified 18 GABAergic transcriptomic cell types belonging to three major classes named after their markers: Vip, Pvalb, and Sst, plus an Ndnf class.",
  "raw_fields": {
    "n": 761,
    "doi": "10.1038/nn.4216",
    "claim": "Tasic et al. (2016) identified 18 GABAergic transcriptomic cell types belonging to three major classes named after their markers: Vip, Pvalb, and Sst, plus an Ndnf class.",
    "title": null,
    "cite_key": "Tasic2016",
    "evidence": "Hierarchical clustering of GABAergic neurons recovered the canonical Vip/Sst/Pvalb classes plus Ndnf, with Vip subdividing into multiple t-types including Vip-Chat, Vip-Gpc3, Vip-Mybpc1, Vip-Sncg, Vip-Parm1.",
    "effect_size": null,
    "text_access": "fulltext",
    "study_system": "mouse V1 cortex; SMART-seq scRNA-seq",
    "target_section": "section_02",
    "_source_cluster": "cluster_01_molecular_taxonomy",
    "replication_status": "replicated",
    "_source_cluster_index": 1,
    "claim_source_sentence": "Our analysis identifies 18 transcriptomic cell types belonging to three previously described major classes of GABAergic cells named after the corresponding markers Vip (vasoactive intestinal peptide), Pvalb (parvalbumin), and Sst (somatostatin)."
  },
  "section_id": "section_01",
  "source_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_01_evidence_package.json",
  "effect_size": null,
  "review_repo": "ComputationalReviewVIP",
  "section_ref": "wiki_page:computationalreviewvip-01-introduction",
  "source_kind": "review_finding",
  "source_path": "evidence/section_01_evidence_package.json",
  "source_refs": [
    "paper:paper-ed2a7f08ef35"
  ],
  "source_span": "Our analysis identifies 18 transcriptomic cell types belonging to three previously described major classes of GABAergic cells named after the corresponding markers Vip (vasoactive intestinal peptide), Pvalb (parvalbumin), and Sst (somatostatin).",
  "study_system": "mouse V1 cortex; SMART-seq scRNA-seq",
  "evidence_refs": [
    {
      "ref": "paper:paper-ed2a7f08ef35"
    }
  ],
  "section_title": "Introduction",
  "source_policy": {
    "mode": "public_source_pointer_with_short_context",
    "notes": [
      "Local review repositories are read-only inputs.",
      "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
    ],
    "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
    "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
  },
  "evidence_summary": "Hierarchical clustering of GABAergic neurons recovered the canonical Vip/Sst/Pvalb classes plus Ndnf, with Vip subdividing into multiple t-types including Vip-Chat, Vip-Gpc3, Vip-Mybpc1, Vip-Sncg, Vip-Parm1.",
  "review_bundle_ref": "analysis_bundle:ab-2ce40c33e827",
  "replication_status": "replicated",
  "review_package_ref": "analysis_bundle:ab-2ce40c33e827",
  "source_artifact_ref": "wiki_page:computationalreviewvip-01-introduction",
  "origin_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_01_evidence_package.json",
  "commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "created_by": "persona-jerome-lecoq-gbo-neuroscience",
  "repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}