Details

scope
GECI engineering benchmark (cultured + in vivo, mouse cortex)
section_id
section_15
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_15_evidence_package.json
effect_size
4 specialized variants for distinct in vivo modes (spikes/neurites/population)
review_repo
ComputationalReviewRecurrence
section_ref
wiki_page:computationalreviewrecurrence-15-methods-limits
source_kind
review_finding
source_path
evidence/section_15_evidence_package.json
study_system
GECI engineering benchmark (cultured + in vivo, mouse cortex)
evidence_summary
Structure-guided + neuron-based screening; four jGCaMP7 variants benchmarked across imaging modalities.
review_bundle_ref
analysis_bundle:ab-d9c479db9be9
replication_status
indicator-paper
review_package_ref
analysis_bundle:ab-d9c479db9be9
source_artifact_ref
wiki_page:computationalreviewrecurrence-15-methods-limits
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_15_evidence_package.json
commit_sha
79ce062d54a924ce05953ec90aa9d26044d2b48f
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence
Raw fields (7)
claim_text
The jGCaMP7 family of green-fluorescent calcium indicators provides distinct variants optimized for single-spike detection (jGCaMP7s,f), neurite/neuropil imaging (jGCaMP7b), and wide-field population imaging (jGCaMP7c) — the indicator landscape that bounds what 'large-scale calcium recording' in mouse cortex actually measures.
raw_fields
{
  "n": 0,
  "doi": "10.1038/s41592-019-0435-6",
  "claim": "The jGCaMP7 family of green-fluorescent calcium indicators provides distinct variants optimized for single-spike detection (jGCaMP7s,f), neurite/neuropil imaging (jGCaMP7b), and wide-field population imaging (jGCaMP7c) — the indicator landscape that bounds what 'large-scale calcium recording' in mouse cortex actually measures.",
  "cite_key": "Dana2019",
  "evidence": "Structure-guided + neuron-based screening; four jGCaMP7 variants benchmarked across imaging modalities.",
  "effect_size": "4 specialized variants for distinct in vivo modes (spikes/neurites/population)",
  "text_access": "abstract_only",
  "study_system": "GECI engineering benchmark (cultured + in vivo, mouse cortex)",
  "argument_role": "supporting",
  "replication_status": "indicator-paper",
  "claim_source_sentence": "The resulting jGCaMP7 sensors provide improved detection of individual spikes (jGCaMP7s,f), imaging in neurites and neuropil (jGCaMP7b), and may allow tracking larger populations of neurons using two-photon (jGCaMP7s,f) or wide-field (jGCaMP7c) imaging.",
  "source_provenance_status": "non_substring_match",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": "The resulting jGCaMP7 sensors provide improved detection of individual spikes (jGCaMP7s,f), imaging in neurites and neuropil (jGCaMP7b)"
}
source_refs
[
  "paper:f9da5cad-8241-41b3-8528-a8e55cc5f0e1"
]
source_span
The resulting jGCaMP7 sensors provide improved detection of individual spikes (jGCaMP7s,f), imaging in neurites and neuropil (jGCaMP7b), and may allow tracking larger populations of neurons using two-photon (jGCaMP7s,f) or wide-field (jGCaMP7c) imaging.
evidence_refs
[
  {
    "ref": "paper:f9da5cad-8241-41b3-8528-a8e55cc5f0e1"
  }
]
section_title
15. Methodological limits and emerging tools — what current mouse-cortex tools cannot yet measure about E→E recurrence (subthreshold network activity, fast plasticity in vivo, millimetre-scale dynamic connectomes), and what is on the near horizon
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}

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