Version history

{
  "scope": "male mouse primary visual cortex",
  "claim_text": "Conditional random fields applied to two-photon calcium imaging of mouse V1 ensembles identify a small subset of pattern-completion neurons whose activation in vivo triggers the entire ensemble.",
  "raw_fields": {
    "n": null,
    "doi": "10.1523/jneurosci.0051-21.2021",
    "claim": "Conditional random fields applied to two-photon calcium imaging of mouse V1 ensembles identify a small subset of pattern-completion neurons whose activation in vivo triggers the entire ensemble.",
    "cite_key": "CarrilloReid2021",
    "evidence": "CRF-based decoding plus closed-loop holographic optogenetic confirmation in mouse V1.",
    "effect_size": null,
    "text_access": "abstract_only",
    "study_system": "male mouse primary visual cortex",
    "argument_role": "supporting",
    "replication_status": "within_lab_replication",
    "claim_source_sentence": "We apply CRFs to identify pattern completion neurons in ensembles in experiments usingtwo-photon calcium imaging from primary visual cortex of male mice and confirm the CRFs predictions with two-photon optogenetics.",
    "source_provenance_status": "non_substring_match",
    "replication_evidence_dois": [
      "10.1126/science.aaf7560",
      "10.1016/j.cell.2019.05.045"
    ],
    "effect_size_source_sentence": null
  },
  "section_id": "section_11",
  "source_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_11_evidence_package.json",
  "effect_size": null,
  "review_repo": "ComputationalReviewRecurrence",
  "section_ref": "wiki_page:computationalreviewrecurrence-11-pattern-completion",
  "source_kind": "review_finding",
  "source_path": "evidence/section_11_evidence_package.json",
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    "paper:paper-8e6840994d9f"
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  "source_span": "We apply CRFs to identify pattern completion neurons in ensembles in experiments usingtwo-photon calcium imaging from primary visual cortex of male mice and confirm the CRFs predictions with two-photon optogenetics.",
  "study_system": "male mouse primary visual cortex",
  "evidence_refs": [
    {
      "ref": "paper:paper-8e6840994d9f"
    }
  ],
  "section_title": "11. Physiological signature III — pattern completion, replay, and sequence generation as recurrent-circuit read-outs in mouse cortex",
  "source_policy": {
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    "notes": [
      "Local review repositories are read-only inputs.",
      "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
    ],
    "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
    "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
  },
  "evidence_summary": "CRF-based decoding plus closed-loop holographic optogenetic confirmation in mouse V1.",
  "review_bundle_ref": "analysis_bundle:ab-d9c479db9be9",
  "replication_status": "within_lab_replication",
  "review_package_ref": "analysis_bundle:ab-d9c479db9be9",
  "source_artifact_ref": "wiki_page:computationalreviewrecurrence-11-pattern-completion",
  "origin_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_11_evidence_package.json",
  "commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "created_by": "persona-jerome-lecoq-gbo-neuroscience",
  "repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}