Details

scope
Cellular connectomes as arbiters of local circuit models in the cerebral cortex.
claim_text
The ensuing average pairwise synaptic connectivity within a barrel has been estimated based on data from paired whole-cell recordings: excitatory neurons connect to about 15–25% of the other intra-ba…
section_id
section_03
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_03_evidence_package.json
review_repo
ComputationalReviewRecurrence
section_ref
wiki_page:computationalreviewrecurrence-03-paired-recording
source_kind
review_finding
source_path
evidence/section_03_evidence_package.json
study_system
Cellular connectomes as arbiters of local circuit models in the cerebral cortex.
section_title
3. Paired-recording evidence in mouse — connection probabilities and synaptic strengths between pyramidal cells within a column, layer-by-layer (Lefort, Petersen, Adesnik, Feldmeyer, Markram-style work in mouse)
review_bundle_ref
analysis_bundle:ab-d9c479db9be9
replication_status
unevaluated
review_package_ref
analysis_bundle:ab-d9c479db9be9
source_artifact_ref
wiki_page:computationalreviewrecurrence-03-paired-recording
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_03_evidence_package.json
commit_sha
79ce062d54a924ce05953ec90aa9d26044d2b48f
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence
Raw fields (6)
raw_fields
{
  "n": null,
  "doi": "10.1038/s41467-021-22856-z",
  "claim": "The ensuing average pairwise synaptic connectivity within a barrel has been estimated based on data from paired whole-cell recordings: excitatory neurons connect to about 15–25% of the other intra-ba…",
  "cite_key": "Klinger2021",
  "evidence": "With the availability of cellular-resolution connectivity maps, connectomes, from the mammalian nervous system, it is in question how informative such massive connectomic data can be for the distinction of local circuit models in the mammalian cerebral cortex. Here, we investigated whether cellular-resolution connectomic data can in principle allow model discrimination for local circuit modules in layer 4 of mouse primary somatosensory cortex. We used approximate Bayesian model selection based on a set of simple connectome statistics to compute the posterior probability over proposed models given a to-be-measured connectome. We find that the distinction of the investigated local cortical models is faithfully possible based on purely structural connectomic data with an accuracy of more than 90%, and that such distinction is stable against substantial errors in the connectome measurement. Furthermore, mapping a fraction of only 10% of the local connectome is sufficient for connectome-based model distinction under realistic experimental constraints. Together, these results show for a concrete local circuit example that connectomic data allows model selection in the cerebral cortex and",
  "effect_size": null,
  "text_access": "fulltext",
  "study_system": "Cellular connectomes as arbiters of local circuit models in the cerebral cortex.",
  "argument_role": "supporting",
  "replication_status": null,
  "claim_source_sentence": "The ensuing average pairwise synaptic connectivity within a barrel has been estimated based on data from paired whole-cell recordings: excitatory neurons connect to about 15–25% of the other intra-barrel neurons; inhibitory neurons connect to about 50–60% of the other intra-barrel neurons (Fig.).",
  "source_provenance_status": "ok",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": null
}
source_refs
[
  "paper:paper-1cf664621a30"
]
source_span
The ensuing average pairwise synaptic connectivity within a barrel has been estimated based on data from paired whole-cell recordings: excitatory neurons connect to about 15–25% of the other intra-barrel neurons; inhibitory neurons connect to about 50–60% of the other intra-barrel neurons (Fig.).
evidence_refs
[
  {
    "ref": "paper:paper-1cf664621a30"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}
evidence_summary
With the availability of cellular-resolution connectivity maps, connectomes, from the mammalian nervous system, it is in question how informative such massive connectomic data can be for the distinction of local circuit models in the mammalian cerebral cortex. Here, we investigated whether cellular-resolution connectomic data can in principle allow model discrimination for local circuit modules in layer 4 of mouse primary somatosensory cortex. We used approximate Bayesian model selection based on a set of simple connectome statistics to compute the posterior probability over proposed models given a to-be-measured connectome. We find that the distinction of the investigated local cortical models is faithfully possible based on purely structural connectomic data with an accuracy of more than 90%, and that such distinction is stable against substantial errors in the connectome measurement. Furthermore, mapping a fraction of only 10% of the local connectome is sufficient for connectome-based model distinction under realistic experimental constraints. Together, these results show for a concrete local circuit example that connectomic data allows model selection in the cerebral cortex and

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