Details

scope
Cleared whole adult mouse brain (iDISCO protocol)
section_id
section_15
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_15_evidence_package.json
effect_size
28 antibodies validated; single-axon resolution in cleared adult mouse brain
review_repo
ComputationalReviewRecurrence
section_ref
wiki_page:computationalreviewrecurrence-15-methods-limits
source_kind
review_finding
source_path
evidence/section_15_evidence_package.json
study_system
Cleared whole adult mouse brain (iDISCO protocol)
evidence_summary
Tested with 28 antibodies; single-axon resolution in adult mouse brain; whole-mount volumes.
review_bundle_ref
analysis_bundle:ab-d9c479db9be9
replication_status
method-paper
review_package_ref
analysis_bundle:ab-d9c479db9be9
source_artifact_ref
wiki_page:computationalreviewrecurrence-15-methods-limits
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_15_evidence_package.json
commit_sha
79ce062d54a924ce05953ec90aa9d26044d2b48f
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence
Raw fields (7)
claim_text
iDISCO is a whole-mount immunolabeling-plus-volume-imaging protocol compatible with 28 tested antibodies that permits visualization of single degenerating axons in adult brain — the protocol that underlies most subsequent cleared-tissue whole-mouse-cortex axon-tracing work.
raw_fields
{
  "n": 0,
  "doi": "10.1016/j.cell.2014.10.010",
  "claim": "iDISCO is a whole-mount immunolabeling-plus-volume-imaging protocol compatible with 28 tested antibodies that permits visualization of single degenerating axons in adult brain — the protocol that underlies most subsequent cleared-tissue whole-mouse-cortex axon-tracing work.",
  "cite_key": "Renier2014",
  "evidence": "Tested with 28 antibodies; single-axon resolution in adult mouse brain; whole-mount volumes.",
  "effect_size": "28 antibodies validated; single-axon resolution in cleared adult mouse brain",
  "text_access": "abstract_only",
  "study_system": "Cleared whole adult mouse brain (iDISCO protocol)",
  "argument_role": "supporting",
  "replication_status": "method-paper",
  "claim_source_sentence": "We describe a simple, rapid, and inexpensive method, iDISCO, that permits whole-mount immunolabeling with volume imaging of large cleared samples ranging from perinatal mouse embryos to adult organs, such as brains or kidneys. iDISCO is modeled on classical histology techniques, facilitating translation of section staining assays to intact tissues, as evidenced by compatibility with 28 antibodies to both endogenous antigens and transgenic reporters like GFP.",
  "source_provenance_status": "non_substring_match",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": "It also permitted imaging of single degenerating axons in adult brain and the first visualization of cleaved Caspase-3 in degenerating embryonic sensory axons in vivo, even single axons."
}
source_refs
[
  "paper:paper-697b07e8c7cc"
]
source_span
We describe a simple, rapid, and inexpensive method, iDISCO, that permits whole-mount immunolabeling with volume imaging of large cleared samples ranging from perinatal mouse embryos to adult organs, such as brains or kidneys. iDISCO is modeled on classical histology techniques, facilitating translation of section staining assays to intact tissues, as evidenced by compatibility with 28 antibodies to both endogenous...
evidence_refs
[
  {
    "ref": "paper:paper-697b07e8c7cc"
  }
]
section_title
15. Methodological limits and emerging tools — what current mouse-cortex tools cannot yet measure about E→E recurrence (subthreshold network activity, fast plasticity in vivo, millimetre-scale dynamic connectomes), and what is on the near horizon
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}

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