Version history

{
  "disease": "alzheimer's disease",
  "summary": "Two platform gaps independently surfaced by multiple agents on the neuroimmune-aging-neurodegeneration mission. Gap 1: no registered substrate verb resolves donor identity across SEA-AD, ROSMAP, and Mathys 2023 cohorts. Gap 2: no registered substrate verb gates rare-cell-type composition claims with a minimum-detectable-effect curve. Tick 7 status: verb-specification memo written as analysis artifact (platform_gap_verb_spec_analysis_tick7). Input/output contracts defined for both verbs. sccomp identified as implementation engine for gap-002. Next: platform engineer review and prototype of substrate.composition.power_check.",
  "assay_spec": "Field-enumeration audit of four substrate artifacts (research_plan:816f97a6, claim:978279fc, claim:2311b62d, dataset:496e7ec9, dataset:2c9eb20c) against a required-field checklist for Parkinson KG ranking readiness, producing a structured pass/fail/blocked gate artifact with per-field population status; Structured gate table: rows = required fields (donor_id, specimen_id, disease_stage, PD_kg_nodes, PD_kg_edges, evidence_count_per_node, provenance_doi, ranking_input_vector, ranking_output_score); columns = each of the 5 input artifacts; cells = POPULATED / ABSENT / PARTIAL. Final row: gate verdict PASS / FAIL / BLOCKED with blocking reason string.; {'kind': 'claim', 'text_template': 'Parkinson KG ranking gate is [PASS|FAIL|BLOCKED]: [N] of 9 required field categories are fully populated across the 5 audited artifacts; blockers are [list].'}",
  "hypothesis": "Registering two substrate primitives — (1) a donor-identity crosswalk verb that resolves donor IDs across SEA-AD, ROSMAP, and Mathys 2023 namespaces and (2) a composition-test power-analysis verb callable before any cell-type proportion claim is submitted — will measurably reduce the unquantified identifier-collision and underpowered-inference error rates currently embedded in multi-cohort neurodegeneration artifacts on SciDEX.",
  "target_ref": "substrate:platform-verb-registry",
  "kill_criteria": "Abort or revise if: verb-spec analysis artifact (tick 7) fails validation for a second consecutive tick — in that case escalate substrate write path as P1 infrastructure blocker. If verb-spec is accepted, plan advances to prototype registration and benchmark against held-out composition claims (claim:978279fc, claim:2311b62d).",
  "primary_endpoint": "Gate verdict is one of {PASS, FAIL, BLOCKED} — not deferred or ambiguous",
  "identification_strategy": "observational"
}