Version history

{
  "version": "0.1.0",
  "summary": "Query the SciDEX knowledge graph (entities + typed edges) by SPARQL-flavored predicates.",
  "runtime": "http_post",
  "runtime_config": {
    "url_env": "SCIDEX_V1_TOOLS_KG_QUERY_URL",
    "url_default": "http://v1.scidex.ai/internal/tools/kg_query",
    "timeout_secs": 60
  },
  "input_schema": {
    "type": "object",
    "required": [
      "seed"
    ],
    "properties": {
      "seed": {
        "type": "string",
        "description": "Seed entity (gene symbol, disease name, pathway id, etc.)."
      },
      "depth": {
        "type": "integer",
        "default": 1,
        "maximum": 4,
        "minimum": 1
      },
      "limit": {
        "type": "integer",
        "default": 100,
        "maximum": 500,
        "minimum": 1
      },
      "direction": {
        "enum": [
          "out",
          "in",
          "both"
        ],
        "type": "string",
        "default": "out"
      },
      "predicate": {
        "type": "string",
        "description": "Edge type to traverse (e.g. 'regulates', 'associated_with', 'is_part_of')."
      }
    }
  },
  "output_schema": {
    "type": "object",
    "properties": {
      "edges": {
        "type": "array",
        "items": {
          "type": "object",
          "properties": {
            "to": {
              "type": "string"
            },
            "from": {
              "type": "string"
            },
            "evidence": {
              "type": "array",
              "items": {
                "type": "string"
              }
            },
            "predicate": {
              "type": "string"
            }
          }
        }
      },
      "nodes": {
        "type": "array",
        "items": {
          "type": "object",
          "properties": {
            "id": {
              "type": "string"
            },
            "type": {
              "type": "string"
            },
            "label": {
              "type": "string"
            }
          }
        }
      }
    }
  },
  "examples": [
    {
      "input": {
        "seed": "LRRK2",
        "depth": 2,
        "predicate": "associated_with"
      }
    }
  ],
  "lifecycle_state": "active"
}