Version history

{
  "version": "0.1.0",
  "summary": "Ingest Mendelian randomization summary statistics from OpenGWAS/IEU-MR and emit causal_link artifact rows.",
  "runtime": "skill_call",
  "runtime_config": {
    "skill_name": "mr_ingest",
    "timeout_secs": 300
  },
  "input_schema": {
    "type": "object",
    "required": [
      "phenotype_query"
    ],
    "properties": {
      "limit": {
        "type": "integer",
        "default": 50,
        "maximum": 1000,
        "minimum": 1,
        "description": "Maximum number of GWAS studies to return per query."
      },
      "mr_types": {
        "type": "array",
        "items": {
          "enum": [
            "bi-directional MR",
            "colocalization",
            "Mendelian randomization",
            "polygenic risk score"
          ],
          "type": "string"
        },
        "default": [
          "Mendelian randomization"
        ],
        "description": "MR study types to include from OpenGWAS."
      },
      "phenotype_query": {
        "type": "string",
        "description": "Free-text phenotype or disease name to search for in OpenGWAS (e.g. \"Alzheimer's disease\")."
      }
    }
  },
  "output_schema": {
    "type": "object",
    "properties": {
      "errors": {
        "type": "integer",
        "description": "Number of studies that failed to ingest."
      },
      "skipped": {
        "type": "integer",
        "description": "Number of studies skipped (no gene symbol, duplicates, etc.)."
      },
      "took_ms": {
        "type": "integer",
        "description": "Wall-clock time for the ingestion in milliseconds.\""
      },
      "ingested": {
        "type": "integer",
        "description": "Number of causal_link artifact rows created or updated."
      },
      "causal_link_ids": {
        "type": "array",
        "items": {
          "type": "string"
        },
        "description": "IDs of the created causal_link artifacts."
      }
    }
  },
  "resource_caps": {
    "network": "external",
    "max_duration_secs": 300
  },
  "cost_model": {
    "per_call_usd": 0.05
  },
  "examples": [
    {
      "input": {
        "limit": 20,
        "phenotype_query": "Alzheimer's disease"
      },
      "description": "Ingest MR summary statistics for Alzheimer's disease from OpenGWAS."
    }
  ],
  "lifecycle_state": "active"
}