Version history

{
  "version": "0.1.0",
  "summary": "Resolve a pathway name or id to its members, parent pathway, and annotations (Reactome / KEGG / WikiPathways).",
  "runtime": "http_post",
  "runtime_config": {
    "url_env": "SCIDEX_V1_TOOLS_PATHWAY_LOOKUP_URL",
    "url_default": "http://v1.scidex.ai/internal/tools/pathway_lookup",
    "timeout_secs": 30
  },
  "input_schema": {
    "type": "object",
    "required": [
      "identifier"
    ],
    "properties": {
      "source": {
        "enum": [
          "reactome",
          "kegg",
          "wikipathways",
          "any"
        ],
        "type": "string",
        "default": "any"
      },
      "identifier": {
        "type": "string",
        "description": "Pathway name or id (Reactome R-HSA-..., KEGG hsa..., or free text)."
      }
    }
  },
  "output_schema": {
    "type": "object",
    "properties": {
      "name": {
        "type": "string"
      },
      "source": {
        "type": "string"
      },
      "members": {
        "type": "array",
        "items": {
          "type": "string",
          "description": "Gene symbols"
        }
      },
      "parents": {
        "type": "array",
        "items": {
          "type": "string"
        }
      },
      "description": {
        "type": "string"
      }
    }
  },
  "examples": [
    {
      "input": {
        "source": "reactome",
        "identifier": "autophagy"
      }
    }
  ],
  "lifecycle_state": "active"
}