Details

kind
infographic
provider
other
section_id
section_09_evidence_package
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewAstrocytes/blob/1a55da0634a3bc04e5688792ed12141ce271d28e/evidence/section_09_evidence_package.json
target_ref
wiki_page:computationalreviewastrocytes-09
review_repo
ComputationalReviewAstrocytes
section_ref
wiki_page:computationalreviewastrocytes-09
source_path
evidence/section_09_evidence_package.json
section_title
In Vivo Astrocyte Dynamics During Behavior
generation_status
complete
review_bundle_ref
analysis_bundle:ab-029ee9411fe2
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewAstrocytes/blob/1a55da0634a3bc04e5688792ed12141ce271d28e/evidence/section_09_evidence_package.json
commit_sha
1a55da0634a3bc04e5688792ed12141ce271d28e
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewAstrocytes
Raw fields (4)
prompt
Astrocyte Ca2+ responses to locomotion or state transitions span three orders of magnitude in timing: sub-second fast microdomains (Stobart 2018), ~1–2 s population latencies in cortex during locomotion or state switches (Paukert 2014; Bojarskaite 2020), to multi-second flare peaks in Bergmann glia following extended rest (Nimmerjahn 2009). This challenges the textbook claim that astrocyte Ca2+ is uniformly slow and suggests distinct subcellular compartments operate on different timescales.
raw_fields
{
  "papers": [
    {
      "n": 106,
      "doi": "10.1016/j.neuron.2014.04.038",
      "value": "1.4 ± 0.1 s",
      "method": "two-photon in vivo Ca2+ imaging",
      "metric": "onset latency of astrocyte Ca2+ transient after locomotion onset",
      "n_analyzed": "106 locomotion events from 13 mice",
      "ci_or_error": "± 0.1 s SEM",
      "text_access": "fulltext",
      "n_definition": "locomotion events pooled across animals",
      "scope_region": "visual cortex + cerebellum",
      "study_system": "mouse; in vivo two-photon; visual cortex and cerebellum Bergmann glia; awake head-fixed on treadmill",
      "taxonomic_level": "broad class",
      "scope_population": "astrocytes (cortical + Bergmann glia)",
      "value_source_sentence": "In contrast to neuronal activation, which began within 50 ms of locomotion onset, Ca 2+ transients in astrocytes began more than a second later (1.4 ± 0.1 s, n = 106 events from 13 mice), presumably reflecting the additional biochemical steps required to release Ca 2+ from intracellular stores.",
      "experimental_conditions": "voluntary locomotion, darkness; GCaMP3 expressed via GLAST-CreER"
    },
    {
      "n": 93,
      "doi": "10.1016/j.neuron.2009.03.019",
      "value": "4.4 ± 2.5 s",
      "method": "two-photon in vivo Ca2+ imaging with OGB-1 AM",
      "metric": "Ca2+ flare peak latency after locomotion reinitiation",
      "n_analyzed": "93 flare events from 15 mice",
      "ci_or_error": "± 2.5 s SD",
      "text_access": "fulltext",
      "n_definition": "flare events pooled across animals",
      "scope_region": "cerebellar vermis",
      "study_system": "mouse; in vivo two-photon; cerebellar vermis Bergmann glia; awake head-fixed on exercise ball",
      "taxonomic_level": "subtype",
      "scope_population": "Bergmann glia (radial glia)",
      "value_source_sentence": "If >10 s had elapsed since termination of the prior locomotor episode, flares reached peak fluorescence 4.4 ± 2.5 s after reinitiation of movement (n = 93 events, 15 mice) ( Figure 6 C).",
      "experimental_conditions": "voluntary locomotion, following >10 s rest; OGB1-AM bulk loading"
    },
    {
      "n": 0,
      "doi": "10.1016/j.neuron.2018.03.050",
      "value": "588.5 ± 21.2 ms",
      "method": "two-photon in vivo Ca2+ imaging, frame + line-scan",
      "metric": "onset latency of fast astrocyte microdomains (MDs) after sensory stimulus",
      "n_analyzed": "events pooled across animals (n not reported in this sentence)",
      "ci_or_error": "± 21.2 ms SEM",
      "text_access": "fulltext",
      "n_definition": "Ca2+ microdomain events",
      "scope_region": "somatosensory cortex",
      "study_system": "mouse; in vivo two-photon; somatosensory cortex; awake head-fixed",
      "taxonomic_level": "fine compartment",
      "scope_population": "astrocyte fine processes (microdomains)",
      "value_source_sentence": "Fast MDs had a peak onset latency on a similar scale to neurons (mean neuronal onset = 270.7 ± 4.3 ms; mean fast MDs onset = 588.5 ± 21.2 ms; mean delayed MDs onset = 5.45 ± 0.05 s; Figure 2 E).",
      "experimental_conditions": "sensory stimulation; GCaMP6f in astrocytes"
    },
    {
      "n": 0,
      "doi": "10.1038/s41467-020-17062-2",
      "value": "1–2 s before",
      "method": "two-photon + polysomnography",
      "metric": "time astrocyte Ca2+ increase precedes sleep→wake transition",
      "n_analyzed": "NREM→wake (60%) and IS→wake (72%) transitions",
      "ci_or_error": "range 1–2 s",
      "text_access": "fulltext",
      "n_definition": "sleep–wake transition events",
      "scope_region": "somatosensory cortex",
      "study_system": "mouse; in vivo two-photon; somatosensory cortex; head-fixed",
      "taxonomic_level": "broad class",
      "scope_population": "all cortical astrocytes (Lck-GCaMP6f)",
      "value_source_sentence": "We observed a prominent increase in astrocytic Ca 2+ signal frequency 1–2 s before the shift in ECoG, EMG, and mouse movement in 60% of NREM sleep to wakefulness and 72% of IS sleep to wakefulness transitions (Fig.",
      "experimental_conditions": "natural sleep-wake; Lck-GCaMP6f in cortical astrocytes; ECoG + EMG"
    }
  ],
  "comparison_id": "locomotion-ca-timing-across-regions",
  "comparison_name": "Locomotion-evoked astrocyte Ca2+ transient timing across cerebellum and cortex",
  "comparison_type": "cross-study convergent evidence with timescale contrast",
  "what_it_reveals": "Astrocyte Ca2+ responses to locomotion or state transitions span three orders of magnitude in timing: sub-second fast microdomains (Stobart 2018), ~1–2 s population latencies in cortex during locomotion or state switches (Paukert 2014; Bojarskaite 2020), to multi-second flare peaks in Bergmann glia following extended rest (Nimmerjahn 2009). This challenges the textbook claim that astrocyte Ca2+ is uniformly slow and suggests distinct subcellular compartments operate on different timescales.",
  "homogeneity_check": {
    "caveats": [
      "Regions differ: cerebellar Bergmann glia (Nimmerjahn 2009) vs. visual cortex + cerebellum (Paukert 2014) vs. somatosensory cortex (Stobart 2018, Bojarskaite 2020).",
      "Indicator differs: OGB1-AM bulk loading (Nimmerjahn 2009) vs. GCaMP3 (Paukert 2014) vs. GCaMP6f with line scan (Stobart 2018) vs. Lck-GCaMP6f (Bojarskaite 2020) — the progression of sensitivity/kinetics directly affects detectable event classes.",
      "Spatial scale: Paukert/Nimmerjahn report soma/population events; Stobart reports fine-process microdomains; Bojarskaite reports membrane-targeted Lck signals. A whole-cell soma measurement and a process microdomain measurement should not be treated as equivalent observations.",
      "Stimulus differs: spontaneous locomotion (Nimmerjahn, Paukert, Bojarskaite) vs. sensory stimulation triggering fast MDs (Stobart).",
      "The Nimmerjahn n=93 is events pooled across 15 mice; Paukert n=106 from 13 mice; Stobart sentence does not report n for the 588.5 ms value in the source sentence cited; Bojarskaite reports percentages of transitions rather than a pooled n."
    ],
    "n_definition_uniform": "false",
    "scope_region_uniform": "false",
    "taxonomic_level_uniform": "false",
    "scope_population_uniform": "false"
  },
  "suggested_plot_type": "forest plot with log-scale x-axis of latency"
}
source_refs
[
  "paper:paper-1b56aab49663",
  "paper:paper-23d7b31898ec",
  "paper:paper-9a1be146dacd",
  "paper:paper-a94b64d9f47e"
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "1a55da0634a3bc04e5688792ed12141ce271d28e",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewAstrocytes"
}

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