Details

kind
infographic
prompt
Molecular Adaptations: Synaptic Plasticity, Transcriptional Cascades, and Epigenetic Mechanisms figure 4
provider
other
section_id
section_03_evidence
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewAddiction/blob/43d33061a22aa4fed3f7dc71fabbfa48ab1d6f48/evidence/section_03_evidence.json
target_ref
wiki_page:computationalreviewaddiction-03
review_repo
ComputationalReviewAddiction
section_ref
wiki_page:computationalreviewaddiction-03
source_path
evidence/section_03_evidence.json
section_title
Molecular Adaptations: Synaptic Plasticity, Transcriptional Cascades, and Epigenetic Mechanisms
generation_status
complete
review_bundle_ref
analysis_bundle:ab-d95cfb705572
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewAddiction/blob/43d33061a22aa4fed3f7dc71fabbfa48ab1d6f48/evidence/section_03_evidence.json
commit_sha
43d33061a22aa4fed3f7dc71fabbfa48ab1d6f48
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewAddiction
Raw fields (3)
raw_fields
{
  "papers": [
    {
      "n": 6,
      "doi": "10.3390/ph18101513",
      "value": "52 ± 0.5",
      "metric": "Cytokine level or microglial activation marker",
      "cite_key": "Mende2025",
      "text_access": "fulltext",
      "study_system": "rat",
      "value_source_sentence": "Behavioral Measurements  The tail-flick analgesia assay was performed using hot-water immersion at 52 ± 0.5 °C before and after a 5-day morphine infusion."
    },
    {
      "n": null,
      "doi": "10.1016/j.addicn.2024.100194",
      "value": "4 pa",
      "metric": "Cytokine level or microglial activation marker",
      "cite_key": "Melkumyan2025",
      "text_access": "fulltext",
      "study_system": "review",
      "value_source_sentence": "Downstream signaling factors in the TLR4 pathway may also be involved in alcohol effects in the CeA."
    },
    {
      "n": 17,
      "doi": "10.1126/sciadv.adu5874",
      "value": "P  = 0.0049",
      "metric": "Cytokine level or microglial activation marker",
      "cite_key": "Xiao2026",
      "text_access": "fulltext",
      "study_system": "rat",
      "value_source_sentence": "However, the age at seizure onset was older in the post–COVID-19 nonactive TLE group compared to the active group ( P  = 0.0049)."
    },
    {
      "n": null,
      "doi": "10.3389/fimmu.2025.1671578",
      "value": "13  pa",
      "metric": "Cytokine level or microglial activation marker",
      "cite_key": "Han2025",
      "text_access": "fulltext",
      "study_system": "rat",
      "value_source_sentence": "Rank  Keyword  Counts  Rank  Keyword  Counts      1  inflammation  710  11  vagus nerve  134    2  neuroinflammation  495  12  cytokine  131    3  microglia  402  13  pain  129    4  cytokines  325  14  multiple sclerosis  114    5  cholinergic anti-inflammatory pathway"
    },
    {
      "n": 14,
      "doi": "10.3390/ijms27041670",
      "value": "p  = 0.020",
      "metric": "Cytokine level or microglial activation marker",
      "cite_key": "Lorkiewicz2026",
      "text_access": "fulltext",
      "study_system": "rat",
      "value_source_sentence": "Additionally, the type of viral infection was significantly associated only with depression severity at Stage 2, as assessed by the HADS ( p  = 0.020)."
    },
    {
      "n": 727,
      "doi": "10.3389/fimmu.2025.1645991",
      "value": "727 pa",
      "metric": "Cytokine level or microglial activation marker",
      "cite_key": "Yu2025",
      "text_access": "fulltext",
      "study_system": "rat",
      "value_source_sentence": "Subsequent research, including a multicenter cohort study involving 1,727 participants, demonstrated a strong interaction between chronic depressive symptoms and elevated inflammation levels ( 59 – 61 )."
    },
    {
      "n": 37,
      "doi": "10.1038/s41398-026-03907-9",
      "value": "p = 0.042",
      "metric": "Cytokine level or microglial activation marker",
      "cite_key": "Petit2026",
      "text_access": "fulltext",
      "study_system": "human",
      "value_source_sentence": "116, p = 0.042)."
    },
    {
      "n": 61,
      "doi": "10.3390/brainsci14050435",
      "value": "2 mg/kg",
      "metric": "Cytokine level or microglial activation marker",
      "cite_key": "Nagy2024",
      "text_access": "fulltext",
      "study_system": "rat",
      "value_source_sentence": "During the first 3 days of postsurgical care, rats were administered meloxicam (2 mg/kg s."
    }
  ],
  "n_definition": "Variable across studies",
  "scope_region": "Multiple brain regions",
  "comparison_id": "fig_sec3_neuroimmune_evidence_strength",
  "comparison_type": "evidence_strength_assessment",
  "scope_population": "Microglia, astrocytes, neurons",
  "homogeneity_check": {
    "caveats": [
      "Highly heterogeneous measures: cytokine levels, microglial morphology, TLR4 expression",
      "Mix of brain regions, drug types, and exposure paradigms",
      "This figure assesses evidence strength rather than comparing magnitudes",
      "Designed as Type D summary figure highlighting thin evidence base"
    ],
    "comparable": false
  },
  "suggested_plot_type": "evidence_scorecard"
}
source_refs
[
  "paper:paper-1da3c24ee8b6",
  "paper:paper-4c732f11accf",
  "paper:paper-73f762a2eb7f",
  "paper:paper-8c24a940bbcd",
  "paper:paper-9c2625e6f47a",
  "paper:paper-dae656716b81",
  "paper:paper-f70b36d7f0f5",
  "paper:paper-fb7aabb25ac1"
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "43d33061a22aa4fed3f7dc71fabbfa48ab1d6f48",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewAddiction"
}

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