Details

kind
infographic
prompt
Model Fit Across Dopamine Computational Frameworks
provider
other
section_id
section_11_evidence
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewNeuromodulation/blob/95db5c630fe54e183d9c452cf826ce502d4a872d/evidence/section_11_evidence.json
target_ref
wiki_page:computationalreviewneuromodulation-11
review_repo
ComputationalReviewNeuromodulation
section_ref
wiki_page:computationalreviewneuromodulation-11
source_path
evidence/section_11_evidence.json
section_title
Computational Models of Brain-Wide Neuromodulation
generation_status
complete
review_bundle_ref
analysis_bundle:ab-a3dbbaf9b625
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewNeuromodulation/blob/95db5c630fe54e183d9c452cf826ce502d4a872d/evidence/section_11_evidence.json
commit_sha
95db5c630fe54e183d9c452cf826ce502d4a872d
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewNeuromodulation
Raw fields (3)
raw_fields
{
  "title": "Model Fit Across Dopamine Computational Frameworks",
  "metric": "Model fit (R² or variance explained)",
  "papers": [
    {
      "doi": "10.1016/j.biopsych.2024.01.025",
      "value": 0.69,
      "condition": "Mouse, frontal cortex NE during threat learning",
      "model_type": "Uncertainty temporal difference (NE threat prediction)",
      "value_source_sentence": "We fit cue-evoked NE to the Rescorla-Wagner model and found that NE release fit this model both during 20 trials of tone/shock pairing (adjusted R 2 = 0.6869)"
    },
    {
      "doi": "10.1016/j.biopsych.2024.01.025",
      "value": "Rescorla-Wagner model fit: adjusted R² = 0.6869 (acquisition), adjusted R² = 0.6911 (extinction); behavioral freezing poorly predicted: adjusted R² = 0.0124 (acquisition), R² = 0.0241 (extinction)",
      "condition": "mouse; optogenetics; GRABNE fluorescent sensor",
      "model_type": "11.2",
      "value_source_sentence": "We fit cue-evoked NE to the Rescorla-Wagner model and found that NE release fit this model both during 20 trials of tone/shock pairing (adjusted R 2 = 0.6869) and during 10 extinction trials (adjusted R 2 = 0.6911). In contrast, cue NE did not fully explain behavioral freezing to the same extent (ac"
    },
    {
      "doi": "10.1038/s41467-024-51729-4",
      "value": "Computational modeling reveals that these effects cannot be explained by increased decision noise but can be explained by value-independent risky bias and perseveration parameters, decision biases pre",
      "condition": "rat; human; computational model",
      "model_type": "11.3",
      "value_source_sentence": "Computational modeling reveals that these effects cannot be explained by increased decision noise but can be explained by value-independent risky bias and perseveration parameters, decision biases previously linked to dopamine"
    },
    {
      "doi": "10.3390/biomedicines13071783",
      "value": "Machine learning models achieve a classification accuracy of 70-88% and may support the tracking of early treatment responses",
      "condition": "rat; computational model; human fMRI",
      "model_type": "11.5",
      "value_source_sentence": "Machine learning models achieve a classification accuracy of 70-88% and may support the tracking of early treatment responses"
    },
    {
      "doi": "10.1016/j.neuroimage.2026.121697",
      "value": "<h4>Results</h4>The MCRNN achieved robust predictive performance (accuracy = 0",
      "condition": "rat; human; computational model",
      "model_type": "11.6",
      "value_source_sentence": "<h4>Results</h4>The MCRNN achieved robust predictive performance (accuracy = 0"
    },
    {
      "doi": "10.1371/journal.pcbi.1013226",
      "value": "These same models also quantitatively matched mesolimbic dLight measurements better than non-Bayesian alternatives",
      "condition": "mouse; rat; computational model",
      "model_type": "11.4",
      "value_source_sentence": "These same models also quantitatively matched mesolimbic dLight measurements better than non-Bayesian alternatives"
    }
  ],
  "n_analyzed": "Varies by study",
  "description": "Comparison of model fit metrics (R², variance explained) across different computational accounts of dopamine: RL prediction error models vs. active inference precision models vs. Bayesian models",
  "n_definition": "Varies: trials in behavioral tasks, neurons in recordings",
  "scope_region": "Multiple brain regions (VTA, striatum, frontal cortex)",
  "comparison_id": "fig_sec11_model_fit_comparison",
  "taxonomic_level": "Not applicable (computational neuroscience)",
  "scope_population": "Neural signals in model organisms and human behavior",
  "homogeneity_check": "Low homogeneity: studies use different species (mouse, rat, human), different measures (neural firing, BOLD fMRI, neurotransmitter release), different model architectures. Direct comparison of R² values across studies is misleading without normalizing for task complexity and data type."
}
source_refs
[
  "paper:paper-02ec8298a8e4",
  "paper:paper-5967f4943309",
  "paper:paper-9f862d1516eb",
  "paper:paper-bc3005028e84",
  "paper:paper-f4d141e3533b"
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "95db5c630fe54e183d9c452cf826ce502d4a872d",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewNeuromodulation"
}

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