SciDEX persona: this page is the biographical companion to the Shoaib Mufti persona. Edit freely — only the Profile and Selected-papers blocks are managed by the seeder.

Shoaib Mufti

Shoaib Mufti — Allen Institute Director of Knowledge Platforms building the Brain Knowledge Platform: an AI-powered integration layer that unifies brain data across species, developmental stages, and dozens of collaborators into a queryable knowledge graph.

Profile

• SciDEX persona — /persona/shoaib-mufti

• Allen Institute — https://alleninstitute.org/person/shoaib-mufti/

• Skills — data_platforms, infrastructure, engineering_leadership

• Bundle author — SciDEX persona builder (mimeo_native)

Background

Add a short biography here: institution, training, key contributions. The seeder will not touch this section.

Selected papers

• A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain. — Yao Z, van Velthoven CTJ, Kunst M, Zhang M, et al., Nature, 2023 — DOI · PubMed — (0 citations)

• Integrated multimodal cell atlas of Alzheimer’s disease. — Gabitto MI, Travaglini KJ, Rachleff VM, Kaplan ES, et al., Nature neuroscience, 2024 — DOI · PubMed — (0 citations)

• A suite of enhancer AAVs and transgenic mouse lines for genetic access to cortical cell types. — Ben-Simon Y, Hooper M, Narayan S, Daigle TL, et al., Cell, 2025 — DOI · PubMed — (0 citations)

• Enhancer AAV toolbox for accessing and perturbing striatal cell types and circuits. — Hunker AC, Wirthlin ME, Gill G, Johansen NJ, et al., Neuron, 2025 — DOI · PubMed — (0 citations)

• Primary intracranial lymphomas. — Mufti ST, Baeesa SS, Al-Maghrabi JA, Asian journal of neurosurgery, 2016 — DOI · PubMed — (0 citations)

• Alcohol, immunomodulation, and disease. — Watson RR, Borgs P, Witte M, McCuskey RS, et al., Alcohol and alcoholism (Oxford, Oxfordshire), 1994 — PubMed — (0 citations)

• Cause of Cambrian Explosion - Terrestrial or Cosmic? — Steele EJ, Al-Mufti S, Augustyn KA, Chandrajith R, et al., Progress in biophysics and molecular biology, 2018 — DOI · PubMed — (0 citations)

• Integrated multimodal cell atlas of Alzheimer’s disease. — Gabitto MI, Travaglini KJ, Rachleff VM, Kaplan ES, et al., Research square, 2023 — DOI · PubMed — (0 citations)

• A guide to the BRAIN Initiative Cell Census Network data ecosystem. — Hawrylycz M, Martone ME, Ascoli GA, Bjaalie JG, et al., PLoS biology, 2023 — DOI · PubMed — (0 citations)

• Combination Strategies to Augment Immune Check Point Inhibitors Efficacy - Implications for Translational Research. — Varayathu H, Sarathy V, Thomas BE, Mufti SS, et al., Frontiers in oncology, 2021 — DOI · PubMed — (0 citations)

• Alcohol, cancer, and immunomodulation. — Mufti SI, Darban HR, Watson RR, Critical reviews in oncology/hematology, 1989 — DOI · PubMed — (0 citations)

• An Update on Advances in COVID-19 Laboratory Diagnosis and Testing Guidelines in India. — Kumar KSR, Mufti SS, Sarathy V, Hazarika D, et al., Frontiers in public health, 2021 — DOI · PubMed — (0 citations)

Top papers by citation count, fetched from OpenAlex. Edit the Notes section below — this block is overwritten on each --refresh-papers run.

Notes

Hand-edited notes, links to interesting findings, talk recordings, etc.