Autoimmune Encephalitis

Overview

Pathway Diagram

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    A["Autoimmune<br/>Disease"] 
    B["cGAS<br/>DNA Sensor"]
    C["NF-kappaB<br/>Transcription Factor"]
    D["Cytokines<br/>Inflammatory Mediators"]
    E["Astrocytes<br/>Glial Cells"]
    F["Inflammation<br/>Process"]
    G["Immune Response<br/>Pathway"]
    H["Innate Immunity<br/>Pathway"]
    I["Neurodegeneration<br/>Outcome"]
    J["Blood-Brain Barrier<br/>Disruption"]
    K["T Cell<br/>Activation"]
    L["Microglial<br/>Activation"]
    M["Therapeutic<br/>Targets"]
    N["Cancer<br/>Comorbidity"]

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    A -->|"activates"| G
    A -->|"activates"| H
    A -->|"therapeutic_target"| C
    A -->|"associated_with"| F
    D -->|"regulates"| A
    E -->|"activates"| A
    F -->|"associated_with"| A
    G -->|"leads_to"| K
    H -->|"activates"| L
    C -->|"promotes"| F
    F -->|"causes"| J
    J -->|"leads_to"| I
    L -->|"secretes"| D
    K -->|"produces"| D
    A -->|"associated_with"| N
    C -->|"connects_to"| M
    D -->|"connects_to"| M

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Autoimmune encephalitis (AE) is a group of inflammatory brain disorders in which the immune system mistakenly attacks healthy brain tissue, leading to diverse neurological and psychiatric manifestations. Once considered rare, AE has emerged as one of the most common causes of encephalitis worldwide, with an incidence estimated at 10-13 per 100,000 person-years

The recognition of AE has revolutionized our understanding of previously enigmatic encephalitic syndromes. Since the discovery of anti-NMDA receptor (NMDAR) encephalitis in 2007^{1NMDAR encephalitis: clinical features, diagnosis and therapy2007 · New England Journal of Medicine · DOI 10.1056/NEJMoa072749Open reference}, over 20 distinct autoantibody targets have been identified, each associated with characteristic clinical features, treatment responses, and prognoses. These antibodies target either neuronal surface antigens (NSAbs) or intracellular antigens, with significant implications for pathogenesis and therapeutic approaches

Epidemiology and Risk Factors

Autoimmune encephalitis affects individuals across all age groups, though certain subtypes show characteristic age distributions. Anti-NMDAR encephalitis predominantly affects young adults, with a median age of 21 years and a strong female predominance (approximately 4:1 ratio), particularly in patients with ovarian teratomas^{2Anti-NMDA receptor encephalitis: clinical features and long-term outcomes2016 · Lancet Neurology · PMID 28671691Open reference}. In contrast, LGI1-associated limbic encephalitis more commonly affects older males, with a median age of 64 years^{3LGI1 encephalitis: clinical features and treatment outcomes2015 · Brain · PMID 26512650Open reference}.

The overall incidence of AE has increased substantially over the past two decades, partly due to improved diagnostic awareness and testing capabilities. Population-based studies from Europe and North America indicate that AE now accounts for 20-30% of all encephalitis cases, surpassing infectious etiologies in many regions^{4Changing patterns in autoimmune encephalitis: a population-based study2020 · Neurology · PMID 33210265Open reference}. Approximately 70-80% of AE cases occur in individuals without known predisposing factors, while the remaining cases are associated with underlying neoplasms (paraneoplastic AE), infections (post-infectious AE), or other autoimmune disorders^{5Paraneoplastic autoimmune encephalitis: clinical features and tumor associations2021 · Neurology Neuroimmunology Neuroinflammation · PMID 34152947Open reference}.

Geographic and Seasonal Patterns

While AE occurs worldwide, some studies suggest regional variations in incidence and antibody prevalence. The peak incidence appears in winter and spring months for some subtypes, potentially reflecting seasonal infection patterns that trigger post-infectious autoimmunity^{6Incidence of autoimmune encephalitis: a population-based study2019 · JAMA Neurology · PMID 33145817Open reference}. However, more research is needed to establish definitive seasonal patterns.

Genetic Associations

Certain human leukocyte antigen (HLA) alleles confer increased susceptibility to specific AE subtypes. HLA-DRB110:01 is strongly associated with anti-IgLON5 disease^{7Anti-IgLON5 disease: a novel tauopathy2015 · Brain · PMID 26028666Open reference}, while HLA-DQB106:02 shows association with anti-NMDAR encephalitis in some populations. These genetic associations suggest underlying immune dysregulation as a predisposing factor^{8HLA associations in autoimmune encephalitis2019 · Journal of Neurology Neurosurgery and Psychiatry · PMID 29855555Open reference}.

Family history of autoimmune disease is reported in 15-20% of AE patients, with higher rates of autoimmune thyroid disease, type 1 diabetes, and systemic lupus erythematosus. This suggests a shared genetic susceptibility to immune dysregulation^{9Treatment outcomes in autoimmune encephalitis2016 · Lancet Neurology · PMID 28671691Open reference}.

Gender Distribution

Gender distribution varies by AE subtype:

• Anti-NMDAR: Female predominance (4:1), especially with ovarian teratomas

• LGI1 encephalitis: Male predominance (2:1)

• CASPR2 encephalitis: Male predominance (3:1)

• Anti-IgLON5: Equal distribution

These gender differences likely reflect hormonal influences on immune function and differential tumor associations.

Pathophysiology

Antibody-Mediated Mechanisms

The pathogenesis of autoimmune encephalitis involves distinct mechanisms depending on the antibody target. Antibodies against neuronal surface antigens typically cause reversible neuronal dysfunction through several mechanisms:

1. Internalization and modulation: Anti-NMDAR antibodies bind to the GluN1 subunit, causing receptor internalization and reduction of surface NMDAR density, leading to impaired synaptic transmission and cognitive deficits^{10Anti-NMDA receptor antibodies cause receptor internalization2008 · Neuron · DOI 10.1016/j.neuron.2008.10.016Open reference}

2. Functional blockade: Some antibodies, such as those targeting LGI1 or GABA_B receptor, interfere with ligand binding or channel function without causing receptor internalization^{2Anti-NMDA receptor encephalitis: clinical features and long-term outcomes2016 · Lancet Neurology · PMID 28671691Open reference}0

3. Complement activation: Antibodies against intracellular antigens (e.g., Hu, Ma2) are thought to mediate cytotoxicity through T-cell mechanisms rather than direct complement-mediated damage^{2Anti-NMDA receptor encephalitis: clinical features and long-term outcomes2016 · Lancet Neurology · PMID 28671691Open reference}1

Receptor Subunit Specificity

The NMDAR is composed of GluN1 and GluN2 (A-D) subunits. Anti-NMDAR antibodies primarily target the GluN1 subunit, which is essential for receptor function. The binding site localizes to the extracellular domain, and antibody binding can be displaced by exogenous agonists, suggesting competitive inhibition^{2Anti-NMDA receptor encephalitis: clinical features and long-term outcomes2016 · Lancet Neurology · PMID 28671691Open reference}2.

LGI1, a ligand for ADAM22, modulates AMPA receptor function. Anti-LGI1 antibodies disrupt this interaction, leading to impaired synaptic transmission and hyperexcitability. The characteristic faciobrachial dystonic seizures likely arise from disrupted temporal lobe circuitry^{2Anti-NMDA receptor encephalitis: clinical features and long-term outcomes2016 · Lancet Neurology · PMID 28671691Open reference}3.

Cellular Immune Response

Beyond humoral immunity, T-cell-mediated responses contribute significantly to tissue injury in AE. CD8+ cytotoxic T lymphocytes target neurons expressing cognate antigens, particularly in paraneoplastic encephalitis associated with intracellular antigen antibodies^{2Anti-NMDA receptor encephalitis: clinical features and long-term outcomes2016 · Lancet Neurology · PMID 28671691Open reference}4. Microglial activation and inflammatory cytokine production create a pro-inflammatory microenvironment that perpetuates neuronal injury^{2Anti-NMDA receptor encephalitis: clinical features and long-term outcomes2016 · Lancet Neurology · PMID 28671691Open reference}5.

The blood-brain barrier (BBB) plays a critical role in AE pathogenesis. Disruption of the BBB allows peripheral antibodies and immune cells to enter the central nervous system, while also enabling CNS antigens to trigger peripheral immune responses. Studies using dynamic contrast-enhanced MRI have demonstrated BBB leakage in many AE patients, particularly in limbic structures^{2Anti-NMDA receptor encephalitis: clinical features and long-term outcomes2016 · Lancet Neurology · PMID 28671691Open reference}6.

Neuroinflammatory Cascade

The inflammatory response in AE involves multiple cell types and signaling pathways:

• Microglia: Activated microglia produce pro-inflammatory cytokines (IL-1β, IL-6, TNF-α) and reactive oxygen species^{2Anti-NMDA receptor encephalitis: clinical features and long-term outcomes2016 · Lancet Neurology · PMID 28671691Open reference}7

• Astrocytes: Astrocyte dysfunction contributes to excitotoxicity and blood-brain barrier disruption

• T-cells: CD8+ cytotoxic T cells mediate direct neuronal injury; regulatory T cells may be deficient

• B-cells: Both autoantibody-producing plasma cells and antigen-presenting B cells contribute to pathogenesis^{2Anti-NMDA receptor encephalitis: clinical features and long-term outcomes2016 · Lancet Neurology · PMID 28671691Open reference}8

Paraneoplastic Mechanisms

Tumors expressing neuronal antigens trigger immune responses that cross-react with central nervous system tissues. The immune response involves both cellular and humoral mechanisms, with antibodies serving as markers of the underlying immune dysregulation rather than direct mediators of damage in many paraneoplastic syndromes^{2Anti-NMDA receptor encephalitis: clinical features and long-term outcomes2016 · Lancet Neurology · PMID 28671691Open reference}9.

The most well-established paraneoplastic association is between ovarian teratomas and anti-NMDAR encephalitis. Teratoma cells contain neuronal tissue that expresses NMDAR, triggering an immune response that generates cross-reactive antibodies. Tumor resection often leads to clinical improvement, supporting this pathogenic mechanism^{3LGI1 encephalitis: clinical features and treatment outcomes2015 · Brain · PMID 26512650Open reference}0.

Other paraneoplastic associations include:

• Small cell lung cancer: Anti-Hu, Anti-CV2/CRMP5

• Thymoma: Anti-LGI1, Anti-CASPR2, Anti-α3 nicotinic acetylcholine receptor

• Testicular cancer: Anti-NMDAR (rare)

Clinical Features

Core Syndromes

Anti-NMDAR Encephalitis

Anti-NMDAR encephalitis represents the most common and well-characterized AE subtype. The classic presentation involves a prodromal phase with headache, fever, and viral-like symptoms, followed by psychiatric features including anxiety, agitation, behavioral changes, and psychosis^{3LGI1 encephalitis: clinical features and treatment outcomes2015 · Brain · PMID 26512650Open reference}1. The psychiatric manifestations can be severe enough to lead to initial psychiatric admission before neurological diagnosis.

Seizures occur in over 80% of patients, often progressing to refractory status epilepticus. Movement disorders are common, particularly orofacial dyskinesias, choreoathetosis, and dystonia. Autonomic dysfunction manifests as tachycardia, hypertension, hyperthermia, and can progress to severe dysautonomia requiring intensive care support^{3LGI1 encephalitis: clinical features and treatment outcomes2015 · Brain · PMID 26512650Open reference}2.

The disease course typically progresses through characteristic stages:

1. Prodromal phase: Headache, fever, fatigue (days 1-2)

2. Psychiatric phase: Behavioral changes, psychosis (days 2-14)

3. Seizure phase: Refractory seizures, status epilepticus (weeks 2-4)

4. Recovery phase: Gradual improvement over months to years

Limbic Encephalitis

Limbic encephalitis presents with the triad of seizures, memory dysfunction, and psychiatric symptoms. LGI1 encephalitis typically presents with faciobrachial dystonic seizures (FBDS), characterized by brief, unilateral facial and arm contractions, often preceding the development of limbic encephalitis by days to weeks^{3LGI1 encephalitis: clinical features and treatment outcomes2015 · Brain · PMID 26512650Open reference}3. These seizures are highly characteristic and should prompt immediate antibody testing.

Cognitive impairment often includes prominent anterograde amnesia with relative preservation of other cognitive domains. Patients may develop emotional lability and personality changes, reflecting limbic system involvement.

Anti-IgLON5 Disease

Anti-IgLON5 disease presents as a unique syndrome of progressive insomnia, dysarthria, dysphagia, gait disturbance, and cognitive decline. Polysomnography reveals abnormal sleep architecture with REM sleep behavior disorder. The disease has strong associations with HLA-DRB1*10:01 and may have a neurodegenerative component^{3LGI1 encephalitis: clinical features and treatment outcomes2015 · Brain · PMID 26512650Open reference}4.

Associated Symptoms and Signs

Beyond the core syndromes, AE can present with:

• Movement disorders: Tremor, myoclonus, rigidity, ataxia, catatonia

• Cerebellar symptoms: Nystagmus, dysmetria, gait instability

• Brainstem involvement: Cranial nerve palsies, respiratory dysfunction, dysphagia

• Peripheral nerve involvement: Peripheral neuropathy, autonomic ganglionopathy

• Systemic features: Weight loss, thermal dysregulation, skin changes

Seizure Semiology

Seizures in AE are often refractory and may present with various semiologies:

• Focal seizures with impaired awareness

• Generalized tonic-clonic seizures

• Faciobrachial dystonic seizures (LGI1)

• Epilepsia partialis continua

• Status epilepticus (common in anti-NMDAR)

EEG findings correlate poorly with seizure burden, and subclinical seizures may persist despite suppressive therapy.

Diagnosis

Diagnostic Criteria

The 2016 diagnostic criteria for AE proposed by Graus et al. provide a structured approach to diagnosis^{3LGI1 encephalitis: clinical features and treatment outcomes2015 · Brain · PMID 26512650Open reference}5. The criteria require:

1. Subacute onset (rapid progression <3 months) of working memory deficits, altered mental status, or psychiatric symptoms

2. One or more of:

   • New focal CNS findings

   • Seizures not explained by known disorders

   • CSF pleocytosis (>5 cells/μL)

   • MRI features suggestive of encephalitis

3. Exclusion of alternative causes

4. Positive AE-specific antibody in serum or CSF

A definite diagnosis requires the combination of clinical features with confirmatory antibody testing. A probable diagnosis can be made when clinical features are characteristic but antibody testing is negative or unavailable.

Differential Diagnosis

AE must be differentiated from:

• Infectious encephalitis: HSV, VZV, enteroviruses, arboviruses

• Metabolic encephalitis: Wernicke’s, hepatic encephalopathy

• Neurodegenerative diseases: FTD, AD, CJD

• Psychiatric conditions: Primary psychosis, catatonia

• Other inflammatory conditions: CNS vasculitis, neurosarcoidosis

• Toxic exposures: Drug-induced encephalopathy

Key distinguishing features include subacute onset, CSF inflammation, and characteristic MRI findings.

Laboratory Findings

Cerebrospinal Fluid Analysis

CSF findings in AE are variable but commonly include:

• Lymphocytic pleocytosis (10-100 cells/μL) in 60-80% of cases

• Elevated protein in 30-50% of cases

• Oligoclonal bands in approximately 40% of cases

• Normal glucose consistently

• Elevated neurofilament light chain (NfL) in severe cases^{3LGI1 encephalitis: clinical features and treatment outcomes2015 · Brain · PMID 26512650Open reference}6

Neuroimaging

MRI findings depend on the AE subtype:

• Limbic encephalitis: T2/FLAIR hyperintensity in medial temporal lobes, typically unilateral initially

• Anti-NMDAR encephalitis: Often normal early, may develop cortical/subcortical changes in basal ganglia, cerebellum

• Anti-IgLON5: May show brainstem or cerebellar atrophy

• Diffuse involvement: May show multifocal white matter changes in severe cases

FDG-PET can reveal hypometabolism in temporal lobes or diffuse cortical hypermetabolism in anti-NMDAR encephalitis^{3LGI1 encephalitis: clinical features and treatment outcomes2015 · Brain · PMID 26512650Open reference}7. PET imaging may be more sensitive than MRI for detecting early changes.

Electroencephalography

EEG is abnormal in 90% of AE patients, showing:

• Generalized or focal slowing in 70%

• Epileptiform discharges in 40%

• Extreme delta brush pattern in anti-NMDAR encephalitis (specific but not sensitive)

• Periodic lateralized epileptiform discharges (PLEDs) in some cases

Antibody Testing

Serum and CSF testing should be performed simultaneously, as some antibodies (particularly anti-NMDAR) have higher sensitivity in CSF^{3LGI1 encephalitis: clinical features and treatment outcomes2015 · Brain · PMID 26512650Open reference}8. Cell-based assays (CBA) are the gold standard for surface antibody detection, with immunohistochemistry and Western blot serving as supplementary techniques.

Antibody categories:

1. Surface antigens (NSAbs): NMDAR, LGI1, CASPR2, GABA_BR, AMPAR

2. Intracellular antigens: Hu, Ma2, CV2/CRMP5, amphiphysin

3. Synaptic antigens: Synapsin, GRIN2B

The antibody target influences prognosis and treatment response, making accurate identification crucial.

Treatment

First-Line Immunotherapy

First-line therapies should be initiated as soon as AE is suspected:

1. Corticosteroids: Methylprednisolone 1g/day for 3-5 days, followed by oral prednisone taper over 2-6 months

2. Intravenous immunoglobulin (IVIG): 0.4g/kg/day for 5 days

3. Plasma exchange: 5-7 exchanges over 10-14 days

These treatments can be used alone or in combination, with early intervention associated with improved outcomes^{3LGI1 encephalitis: clinical features and treatment outcomes2015 · Brain · PMID 26512650Open reference}9. Combination therapy (corticosteroids + IVIG or plasma exchange) is often recommended for severe cases.

Second-Line Immunotherapy

For patients with inadequate response to first-line therapy (persistent symptoms >2-4 weeks):

• Rituximab: Anti-CD20 monoclonal antibody depleting B-cells at 375mg/m² weekly for 4 weeks

• Cyclophosphamide: Alkylating agent for severe, refractory cases (750mg/m² monthly)

• Mycophenolate mofetil: 1-1.5g twice daily for maintenance therapy

• Azathioprine: 2-3mg/kg/day for maintenance

Second-line therapy is required in approximately 30-50% of anti-NMDAR encephalitis cases^{4Changing patterns in autoimmune encephalitis: a population-based study2020 · Neurology · PMID 33210265Open reference}0.

Tumor Removal

In paraneoplastic AE, tumor identification and removal is crucial:

• Ovarian teratoma in anti-NMDAR encephalitis (found in 20-50% of female patients)

• Small cell lung cancer in anti-Hu, anti-CV2/CRMP5 encephalitis

• Thymoma in anti-LGI1, anti-CASPR2 encephalitis

• Testicular tumors in some male patients

Comprehensive cancer screening should be performed in all AE patients, including:

• CT chest/abdomen/pelvis

• Pelvic ultrasound (females)

• Testicular ultrasound (males)

• Mammogram and Pap smear as age-appropriate

Supportive Care

Aggressive supportive management is often required:

• Seizure control with antiepileptic drugs (often requires multiple agents)

• Management of dysautonomia (autonomic storms, arrhythmias)

• Intensive care for status epilepticus and respiratory failure

• Physical, occupational, and speech therapy

• Psychiatric management during recovery

• Nutritional support for dysphagia

Prognosis

Outcomes vary substantially based on AE subtype and treatment timing:

• Anti-NMDAR encephalitis: Approximately 80% achieve good recovery (mRS 0-2) with aggressive immunotherapy, though recovery may take months to years. Relapse occurs in approximately 10-20% of patients^{4Changing patterns in autoimmune encephalitis: a population-based study2020 · Neurology · PMID 33210265Open reference}1. Persistent cognitive deficits occur in up to 25% of patients.

• Limbic encephalitis (LGI1, GABA_BR): Generally favorable prognosis with early immunotherapy, though cognitive deficits often persist. Approximately 70% achieve functional independence.

• Anti-IgLON5 disease: More progressive course, with approximately 30% mortality at 5 years despite immunotherapy. Most patients require ongoing immunosuppressive therapy^{4Changing patterns in autoimmune encephalitis: a population-based study2020 · Neurology · PMID 33210265Open reference}2.

• Paraneoplastic encephalitis with intracellular antigens: Generally poorer outcomes, with permanent neurological deficits common even with aggressive treatment.

Predictors of Outcome

Positive prognostic factors include:

• Early immunotherapy (within 4 weeks of symptom onset)

• Absence of ICU admission during acute phase

• Female sex in anti-NMDAR encephalitis

• Tumor resection in paraneoplastic cases

• Lower baseline antibody titers

Negative prognostic factors include:

• Delayed treatment (>8 weeks)

• Refractory status epilepticus

• Intensive care admission

• High initial antibody titers

• Anti-Hu or anti-Ma2 antibodies

Relationship to Neurodegenerative Diseases

Emerging evidence links autoimmune encephalitis to neurodegenerative processes. Some patients with AE develop persistent cognitive deficits resembling frontotemporal dementia or Alzheimer’s disease^{4Changing patterns in autoimmune encephalitis: a population-based study2020 · Neurology · PMID 33210265Open reference}3. The long-term cognitive outcomes of AE survivors are an area of active investigation.

Conversely, patients with neurodegenerative diseases may develop AE-like autoimmunity, complicating diagnostic differentiation^{4Changing patterns in autoimmune encephalitis: a population-based study2020 · Neurology · PMID 33210265Open reference}4. The presence of autoantibodies in neurodegenerative diseases may represent:

1. True paraneoplastic phenomena secondary to tumor antigens

2. Epiphenomenon of blood-brain barrier breakdown

3. Primary immune dysregulation contributing to neurodegeneration

Recent studies have identified autoantibodies in patients with Alzheimer’s disease, Parkinson’s disease, and frontotemporal dementia, raising questions about whether autoimmunity contributes to or is a consequence of neurodegeneration.

AE as a Neurodegenerative Model

Anti-IgLON5 disease represents an intriguing intersection between autoimmunity and neurodegeneration. The presence of tau pathology in some patients, combined with HLA-DRB1*10:01 association and progressive course, suggests underlying neurodegeneration triggered or exacerbated by autoimmune mechanisms^{4Changing patterns in autoimmune encephalitis: a population-based study2020 · Neurology · PMID 33210265Open reference}5.

Pediatric Considerations

Autoimmune encephalitis in children has distinct features:

• Anti-NMDAR encephalitis is the most common cause of AE in children

• Higher rates of infectious triggers (HSV, EBV)

• Often better outcomes than adults with aggressive treatment

• Distinct presentation with seizures and movement disorders more prominent

• Ovarian teratomas less common in pre-adolescent children

Pediatric AE requires specialized management including developmental support and school reintegration planning.

Animal Models and Experimental Insights

Animal models have provided crucial insights into AE pathogenesis:

• Anti-NMDAR encephalitis: Passive transfer of patient antibodies to mice causes behavioral deficits and NMDAR internalization^{4Changing patterns in autoimmune encephalitis: a population-based study2020 · Neurology · PMID 33210265Open reference}6

• LGI1 encephalitis: Animal models demonstrate disrupted LGI1-ADAM22 signaling and impaired synaptic plasticity

• Targeted therapies: Experimental approaches include antigen-specific tolerance induction and antibody adsorption

These models enable testing of novel therapeutic strategies before clinical translation.

Economic and Healthcare Burden

AE imposes significant healthcare burden:

• Average hospital stay: 30-60 days

• ICU admission required in 30-50% of cases

• Long-term rehabilitation costs

• Lost productivity due to cognitive sequelae

Early diagnosis and treatment reduce overall costs by shortening hospital stay and improving outcomes.

Quality of Life Considerations

AE survivors face significant quality of life challenges:

• Cognitive impairment affecting daily functioning

• Persistent fatigue and exercise intolerance

• Psychiatric sequelae including anxiety and depression

• Social and occupational reintegration difficulties

Comprehensive follow-up programs addressing physical, cognitive, and psychological domains are essential.

Future Directions

Current research focuses on:

• Understanding antibody pathogenicity and developing targeted therapies

• Identifying novel autoantibody targets using proteomic approaches

• Biomarker development for treatment response and prognosis (CSF NfL, anti-NMDAR titers)

• Long-term outcomes and quality of life studies

• Mechanisms of relapse and tolerance induction

• Role of gut microbiome in AE pathogenesis and treatment response

• Development of antigen-specific immunotherapy approaches

See Also

• NMDA Receptors

• Limbic System

• Encephalitis

• Paraneoplastic Syndromes

• Anti-NMDA Receptor Encephalitis

• Microglia

• Blood-Brain Barrier

• Temporal Lobe Epilepsy

• Seizures and Epilepsy