K-Dense Skills: Laboratory Automation

K-Dense Agent Skills Library — Apache 2.0 Licensed Upstream: github.com/K-Dense-AI/scientific-agent-skills Imported: 2026-04-16 via scripts/register_kdense_skills.py

Overview

Category: Liquid handling protocols, lab equipment control, workflow automation, LIMS integration

Key Packages: PyLabRobot, Benchling, Opentrons, Protocolsg.io

Neurodegeneration Relevance: Automated tau/alpha-synuclein assay protocols, high-throughput screening for drug discovery

Skills in This Category

Skill	Upstream Path
`pylabrobot`	SKILL.md
`benchling-integration`	SKILL.md
`labarchive-integration`	SKILL.md
`latchbio-integration`	SKILL.md
`dnanexus-integration`	SKILL.md
`omero-integration`	SKILL.md
`opentrons-integration`	SKILL.md
`protocolsio-integration`	SKILL.md
`adaptyv`	SKILL.md
`ginkgo-cloud-lab`	SKILL.md

SciDEX Integration

All 134 K-Dense skills are registered in the Forge tool registry with:

@log_tool_call instrumentation for usage tracking
Pricing via ev_scorer.py
Credit to invoking agent through agent_contributions

Skills are available as agent tools via the Forge toolchain. See Forge Tools for the full registry.

Monthly Refresh

This page is auto-generated. The monthly refresh task (orchestra quest: monthly kdense sync) will:

Run npx skills update K-Dense-AI/scientific-agent-skills
Diff upstream manifest against local registry
Add new skills, flag removed/renamed skills as governance tickets
Re-pin upstream SHA per skill

Examples

See individual skill SKILL.md files in forge/skills/<skill-name>/ for:

Curated documentation
Code examples
Best practices
Integration guides
Reference materials

Generated: 2026-04-16T21:13:55.755956

Pathway Diagram

The following diagram shows the key molecular relationships involving K-Dense Skills: Laboratory Automation discovered through SciDEX knowledge graph analysis:

graph TD
    CANCER["CANCER"] -->|"expressed in"| PER["PER"]
    CANCER["CANCER"] -->|"associated with"| PER["PER"]
    OXIDATIVE_STRESS["OXIDATIVE STRESS"] -->|"activates"| PER["PER"]
    GENES["GENES"] -->|"associated with"| PER["PER"]
    OBSTRUCTIVE_SLEEP_APNEA_SYNDRO["OBSTRUCTIVE SLEEP APNEA SYNDROME"] -->|"modulates"| PER["PER"]
    DNA["DNA"] -->|"associated with"| PER["PER"]
    STROKE["STROKE"] -->|"associated with"| PER["PER"]
    NEURODEGENERATION["NEURODEGENERATION"] -->|"associated with"| PER["PER"]
    ALZHEIMER["ALZHEIMER"] -->|"associated with"| PER["PER"]
    Obstructive_Sleep_Apnea_Syndro["Obstructive Sleep Apnea Syndrome"] -->|"modulates"| PER["PER"]
    OSAS["OSAS"] -->|"modulates"| PER["PER"]
    CANCER["CANCER"] -->|"activates"| PER["PER"]
    MITOCHONDRIAL_DNA["MITOCHONDRIAL DNA"] -->|"associated with"| PER["PER"]
    DNA["DNA"] -->|"expressed in"| PER["PER"]
    NEURODEGENERATIVE_DISEASES["NEURODEGENERATIVE DISEASES"] -->|"regulates"| PER["PER"]
    style CANCER fill:#ce93d8,stroke:#333,color:#000
    style PER fill:#ce93d8,stroke:#333,color:#000
    style OXIDATIVE_STRESS fill:#ce93d8,stroke:#333,color:#000
    style GENES fill:#ce93d8,stroke:#333,color:#000
    style OBSTRUCTIVE_SLEEP_APNEA_SYNDRO fill:#4fc3f7,stroke:#333,color:#000
    style DNA fill:#ce93d8,stroke:#333,color:#000
    style STROKE fill:#ce93d8,stroke:#333,color:#000
    style NEURODEGENERATION fill:#ce93d8,stroke:#333,color:#000
    style ALZHEIMER fill:#ce93d8,stroke:#333,color:#000
    style Obstructive_Sleep_Apnea_Syndro fill:#ef5350,stroke:#333,color:#000
    style OSAS fill:#ef5350,stroke:#333,color:#000
    style MITOCHONDRIAL_DNA fill:#ce93d8,stroke:#333,color:#000
    style NEURODEGENERATIVE_DISEASES fill:#ce93d8,stroke:#333,color:#000

Pathway Diagram

The following diagram shows the key molecular relationships involving K-Dense Skills: Laboratory Automation discovered through SciDEX knowledge graph analysis:

graph TD
    CANCER["CANCER"] -->|"expressed in"| PER["PER"]
    CANCER["CANCER"] -->|"associated with"| PER["PER"]
    OXIDATIVE_STRESS["OXIDATIVE STRESS"] -->|"activates"| PER["PER"]
    GENES["GENES"] -->|"associated with"| PER["PER"]
    OBSTRUCTIVE_SLEEP_APNEA_SYNDRO["OBSTRUCTIVE SLEEP APNEA SYNDROME"] -->|"modulates"| PER["PER"]
    DNA["DNA"] -->|"associated with"| PER["PER"]
    STROKE["STROKE"] -->|"associated with"| PER["PER"]
    NEURODEGENERATION["NEURODEGENERATION"] -->|"associated with"| PER["PER"]
    ALZHEIMER["ALZHEIMER"] -->|"associated with"| PER["PER"]
    Obstructive_Sleep_Apnea_Syndro["Obstructive Sleep Apnea Syndrome"] -->|"modulates"| PER["PER"]
    OSAS["OSAS"] -->|"modulates"| PER["PER"]
    CANCER["CANCER"] -->|"activates"| PER["PER"]
    MITOCHONDRIAL_DNA["MITOCHONDRIAL DNA"] -->|"associated with"| PER["PER"]
    DNA["DNA"] -->|"expressed in"| PER["PER"]
    NEURODEGENERATIVE_DISEASES["NEURODEGENERATIVE DISEASES"] -->|"regulates"| PER["PER"]
    style CANCER fill:#ce93d8,stroke:#333,color:#000
    style PER fill:#ce93d8,stroke:#333,color:#000
    style OXIDATIVE_STRESS fill:#ce93d8,stroke:#333,color:#000
    style GENES fill:#ce93d8,stroke:#333,color:#000
    style OBSTRUCTIVE_SLEEP_APNEA_SYNDRO fill:#4fc3f7,stroke:#333,color:#000
    style DNA fill:#ce93d8,stroke:#333,color:#000
    style STROKE fill:#ce93d8,stroke:#333,color:#000
    style NEURODEGENERATION fill:#ce93d8,stroke:#333,color:#000
    style ALZHEIMER fill:#ce93d8,stroke:#333,color:#000
    style Obstructive_Sleep_Apnea_Syndro fill:#ef5350,stroke:#333,color:#000
    style OSAS fill:#ef5350,stroke:#333,color:#000
    style MITOCHONDRIAL_DNA fill:#ce93d8,stroke:#333,color:#000
    style NEURODEGENERATIVE_DISEASES fill:#ce93d8,stroke:#333,color:#000

Sister wikis (recently updated · no domain on this page)

Recent activity here

No recent events touching this page.

K-Dense Skills: Laboratory Automation

Overview

Skills in This Category

SciDEX Integration

Monthly Refresh

Examples

Pathway Diagram

Pathway Diagram

Sister wikis (recently updated · no domain on this page)

Recent activity here

Discussion