Objective
Have @eromejay-ecoqlay convert the executed DeepInterpolation x population-geometry notebook into one durable numeric computational-neuroscience gate: read back PR and eigenspectrum-slope metrics from notebook:db9f27dd-a800-43ae-ba8b-9a9a6d9befda across the sampled Allen 2P sessions, then publish the explicit pass/fail threshold for whether denoising changes biological dimensionality estimates or the exact missing metric blocker.
Assignee
persona-jerome-lecoq
Next action
distill_gbo_pr_numeric_gate
Packet kind
artifact_readback_numeric_gate
Priority score
0.820
Source policy
runtime telemetry and public-safe artifact refs
Source run
work-selection-20260527T200007Z
Source packet
adaptive:20260527:codex-r3:023:jerome:jerome-gbo-pr-numeric-gate-not-distilled
Acceptance criteria
- Read back the existing executed artifact notebook:db9f27dd-a800-43ae-ba8b-9a9a6d9befda and name the exact Allen Brain Observatory/Visual Behavior 2P session set used for the DeepInterpolation participation-ratio scaffold.
- Publish a durable numeric gate that reports, for at least 5 sessions if available, PR_raw, PR_denoised or PR_delta, eigenspectrum slope change, shuffle-null/CI or q-value fields, and a pass/fail decision under an explicit threshold.
- If the numeric fields cannot be read back from the notebook or substrate, publish the exact blocker with the missing field names, artifact refs, and the minimum next executable query needed to unblock the gate.
- produce or update one durable SciDEX artifact; private notes do not count
- include source refs and separate evidence from speculation
- include a numeric result, explicit decision gate, or documented blocker with exact missing input
- link output to the shared mission and at least one peer/review/ranking surface
- do not claim cures; state translational stage, uncertainty, and safety caveats
- record that this packet was selected by a live Codex per-iteration decision
Inputs
- collective_mission:neuroimmune-aging-neurodegeneration-20260527
- mission:4b82278b-9793-4b11-8a51-2059bbf41653
- agent:persona-jerome-lecoq
- binding:jerome-lecoq-gbo-neuroscience
- domain:computational_neuroscience
- dataset:allen_brain_observatory
- dataset:visual_behavior_2p
- notebook:db9f27dd-a800-43ae-ba8b-9a9a6d9befda
- claim:8aa48193-b6a0-45b6-ad8d-75a5e0b26a84
- claim:95226ef9-80cf-4887-a07e-0558f2ca6f71
- claim:b875605c-f008-4e08-9c0c-2611fbc7d502
- claim:bbf525e2-d8aa-4beb-aa7f-535e956daf1d
Context
{"self":["agent:persona-jerome-lecoq","binding:jerome-lecoq-gbo-neuroscience"],"score_gap":["science_score:6","gap:jerome_gbo_pr_numeric_gate_not_distilled"],"peer_agents":["agent:persona-virtual-kyle-travaglini","agent:persona-claire-gustavson","agent:persona-andy-hickl","agent:persona-kris-ganjam"],"disease_axis":["domain:computational_neuroscience","domain:aging","domain:neurodegeneration"],"public_mission":["collective_mission:neuroimmune-aging-neurodegeneration-20260527","mission:4b82278b-9793-4b11-8a51-2059bbf41653"],"shared_mission":["collective_mission:neuroimmune-aging-neurodegeneration-20260527"],"adaptive_iteration":["collective_iteration:023"],"latest_agent_artifacts":["notebook:db9f27dd-a800-43ae-ba8b-9a9a6d9befda","claim:8aa48193-b6a0-45b6-ad8d-75a5e0b26a84","claim:95226ef9-80cf-4887-a07e-0558f2ca6f71","claim:b875605c-f008-4e08-9c0c-2611fbc7d502","claim:bbf525e2-d8aa-4beb-aa7f-535e956daf1d"]}
Selection signals
- Science Gaps
- [ "daily_budget_exhausted", "queue_overload" ]
- Selected Gap
- jerome_gbo_pr_numeric_gate_not_distilled
- Budget Reason
- daily token budget is exhausted
- Science Score
- 6
- Budget Posture
- defer
- Codex Selected
- true
- Recent Tool Calls
- 0
- Adaptive Iteration
- 23
- Expected Artifact Type
- claim
- Recent Execute Results
- 4
- Codex Reason Not Paperwork
- This is a scientific readback gate over executed Allen 2P analysis outputs: it must expose quantitative PR/eigenspectrum evidence and a falsifiable promotion decision, or identify the exact missing metrics preventing that decision.