Version history

{
  "scope": "whole adult mouse brain; 10x scRNA-seq + MERFISH",
  "claim_text": "Yao et al. (2023) reported a whole-brain cell type atlas of adult mouse organized into 34 classes, 338 subclasses, 1,201 supertypes and 5,322 clusters using ~4 million scRNA-seq cells and ~4.3 million MERFISH cells.",
  "raw_fields": {
    "n": 4000000,
    "doi": "10.1038/s41586-023-06812-z",
    "claim": "Yao et al. (2023) reported a whole-brain cell type atlas of adult mouse organized into 34 classes, 338 subclasses, 1,201 supertypes and 5,322 clusters using ~4 million scRNA-seq cells and ~4.3 million MERFISH cells.",
    "title": null,
    "cite_key": "Yao2023",
    "evidence": "Combined scRNA-seq (~4M cells QC) + MERFISH (~4.3M cells) on whole adult mouse brain produced hierarchical taxonomy; Vip GABAergic subclass observed across cortex and other regions, with 5,322 leaf clusters.",
    "effect_size": null,
    "text_access": "fulltext",
    "study_system": "whole adult mouse brain; 10x scRNA-seq + MERFISH",
    "target_section": "section_02",
    "_source_cluster": "cluster_01_molecular_taxonomy",
    "replication_status": "replicated",
    "_source_cluster_index": 9,
    "claim_source_sentence": "The atlas is hierarchically organized into 4 nested levels of classification: 34 classes, 338 subclasses, 1,201 supertypes and 5,322 clusters."
  },
  "section_id": "section_02",
  "source_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_02_evidence_package.json",
  "effect_size": null,
  "review_repo": "ComputationalReviewVIP",
  "section_ref": "wiki_page:computationalreviewvip-02-classification",
  "source_kind": "review_finding",
  "source_path": "evidence/section_02_evidence_package.json",
  "source_refs": [
    "paper:1f98e15e-de06-42f7-9da8-1faa69bba835"
  ],
  "source_span": "The atlas is hierarchically organized into 4 nested levels of classification: 34 classes, 338 subclasses, 1,201 supertypes and 5,322 clusters.",
  "study_system": "whole adult mouse brain; 10x scRNA-seq + MERFISH",
  "evidence_refs": [
    {
      "ref": "paper:1f98e15e-de06-42f7-9da8-1faa69bba835"
    }
  ],
  "section_title": "Molecular Identity and Transcriptomic Taxonomy",
  "source_policy": {
    "mode": "public_source_pointer_with_short_context",
    "notes": [
      "Local review repositories are read-only inputs.",
      "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
    ],
    "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
    "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
  },
  "evidence_summary": "Combined scRNA-seq (~4M cells QC) + MERFISH (~4.3M cells) on whole adult mouse brain produced hierarchical taxonomy; Vip GABAergic subclass observed across cortex and other regions, with 5,322 leaf clusters.",
  "review_bundle_ref": "analysis_bundle:ab-2ce40c33e827",
  "replication_status": "replicated",
  "review_package_ref": "analysis_bundle:ab-2ce40c33e827",
  "source_artifact_ref": "wiki_page:computationalreviewvip-02-classification",
  "origin_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_02_evidence_package.json",
  "commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "created_by": "persona-jerome-lecoq-gbo-neuroscience",
  "repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}