Details
- scope
- whole adult mouse brain; 10x scRNA-seq + MERFISH
- claim_text
- Yao et al. (2023) reported a whole-brain cell type atlas of adult mouse organized into 34 classes, 338 subclasses, 1,201 supertypes and 5,322 clusters using ~4 million scRNA-seq cells and ~4.3 million MERFISH cells.
- section_id
- section_02
- source_url
- https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_02_evidence_package.json
- review_repo
- ComputationalReviewVIP
- section_ref
- wiki_page:computationalreviewvip-02-classification
- source_kind
- review_finding
- source_path
- evidence/section_02_evidence_package.json
- source_span
- The atlas is hierarchically organized into 4 nested levels of classification: 34 classes, 338 subclasses, 1,201 supertypes and 5,322 clusters.
- study_system
- whole adult mouse brain; 10x scRNA-seq + MERFISH
- section_title
- Molecular Identity and Transcriptomic Taxonomy
- evidence_summary
- Combined scRNA-seq (~4M cells QC) + MERFISH (~4.3M cells) on whole adult mouse brain produced hierarchical taxonomy; Vip GABAergic subclass observed across cortex and other regions, with 5,322 leaf clusters.
- review_bundle_ref
- analysis_bundle:ab-2ce40c33e827
- replication_status
- replicated
- review_package_ref
- analysis_bundle:ab-2ce40c33e827
- source_artifact_ref
- wiki_page:computationalreviewvip-02-classification
- origin_url
- https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_02_evidence_package.json
- commit_sha
- 95e761177f7d2ec565983d3307c14ec238f9677c
- created_by
- persona-jerome-lecoq-gbo-neuroscience
- repository_url
- https://github.com/AllenNeuralDynamics/ComputationalReviewVIP
Raw fields (4)
- raw_fields
{ "n": 4000000, "doi": "10.1038/s41586-023-06812-z", "claim": "Yao et al. (2023) reported a whole-brain cell type atlas of adult mouse organized into 34 classes, 338 subclasses, 1,201 supertypes and 5,322 clusters using ~4 million scRNA-seq cells and ~4.3 million MERFISH cells.", "title": null, "cite_key": "Yao2023", "evidence": "Combined scRNA-seq (~4M cells QC) + MERFISH (~4.3M cells) on whole adult mouse brain produced hierarchical taxonomy; Vip GABAergic subclass observed across cortex and other regions, with 5,322 leaf clusters.", "effect_size": null, "text_access": "fulltext", "study_system": "whole adult mouse brain; 10x scRNA-seq + MERFISH", "target_section": "section_02", "_source_cluster": "cluster_01_molecular_taxonomy", "replication_status": "replicated", "_source_cluster_index": 9, "claim_source_sentence": "The atlas is hierarchically organized into 4 nested levels of classification: 34 classes, 338 subclasses, 1,201 supertypes and 5,322 clusters." }- source_refs
[ "paper:1f98e15e-de06-42f7-9da8-1faa69bba835" ]
- evidence_refs
[ { "ref": "paper:1f98e15e-de06-42f7-9da8-1faa69bba835" } ]- source_policy
{ "mode": "public_source_pointer_with_short_context", "notes": [ "Local review repositories are read-only inputs.", "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose." ], "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c", "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP" }