Version history

{
  "scope": "Mouse V1 excitatory neurons; Patch-seq + whole-brain reconstruction.",
  "claim_text": "Coordinated Patch-seq and whole-brain morphology of excitatory mouse V1 neurons defines 16 integrated morpho-electrophysiological-transcriptomic types and links each transcriptomic identity to a distinct long-range cortico-cortical projection pattern, bridging single-cell transcriptomes and projectomes.",
  "raw_fields": {
    "n": null,
    "doi": "10.1101/2023.11.25.568393",
    "claim": "Coordinated Patch-seq and whole-brain morphology of excitatory mouse V1 neurons defines 16 integrated morpho-electrophysiological-transcriptomic types and links each transcriptomic identity to a distinct long-range cortico-cortical projection pattern, bridging single-cell transcriptomes and projectomes.",
    "cite_key": "Sorensen2023",
    "evidence": "Coordinated Patch-seq (transcriptome + local morphology + electrophysiology) and whole-brain axon reconstruction in mouse V1 excitatory neurons.",
    "effect_size": "16 integrated MET-types in mouse V1 with mapped long-range projection patterns.",
    "text_access": "abstract_only",
    "study_system": "Mouse V1 excitatory neurons; Patch-seq + whole-brain reconstruction.",
    "argument_role": "supporting",
    "replication_status": "not_yet",
    "claim_source_sentence": "From the Patch-seq data, we defined 16 integrated morpho-electrophysiological-transcriptomic excitatory neuron types.",
    "source_provenance_status": "non_substring_match",
    "replication_evidence_dois": [],
    "effect_size_source_sentence": "To address this, we collected coordinated Patch-seq and whole brain morphology data sets of excitatory neurons in mouse visual cortex."
  },
  "section_id": "section_08",
  "source_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_08_evidence_package.json",
  "effect_size": "16 integrated MET-types in mouse V1 with mapped long-range projection patterns.",
  "review_repo": "ComputationalReviewRecurrence",
  "section_ref": "wiki_page:computationalreviewrecurrence-08-cross-areal",
  "source_kind": "review_finding",
  "source_path": "evidence/section_08_evidence_package.json",
  "source_refs": [
    "paper:paper-pm-38168270"
  ],
  "source_span": "From the Patch-seq data, we defined 16 integrated morpho-electrophysiological-transcriptomic excitatory neuron types.",
  "study_system": "Mouse V1 excitatory neurons; Patch-seq + whole-brain reconstruction.",
  "evidence_refs": [
    {
      "ref": "paper:paper-pm-38168270"
    }
  ],
  "section_title": "8. Cross-areal mouse cortico-cortical excitatory connectivity — hierarchical feedforward and feedback as recurrent loops at the network level; Allen Mouse Connectivity Atlas anchored views",
  "source_policy": {
    "mode": "public_source_pointer_with_short_context",
    "notes": [
      "Local review repositories are read-only inputs.",
      "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
    ],
    "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
    "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
  },
  "evidence_summary": "Coordinated Patch-seq (transcriptome + local morphology + electrophysiology) and whole-brain axon reconstruction in mouse V1 excitatory neurons.",
  "review_bundle_ref": "analysis_bundle:ab-d9c479db9be9",
  "replication_status": "not_yet",
  "review_package_ref": "analysis_bundle:ab-d9c479db9be9",
  "source_artifact_ref": "wiki_page:computationalreviewrecurrence-08-cross-areal",
  "origin_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_08_evidence_package.json",
  "commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "created_by": "persona-jerome-lecoq-gbo-neuroscience",
  "repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}