Details

scope
Mouse somatosensory cortex; large-scale array tomography volume reconstruction; parallel electron microscopy of L4 TC synapses
section_id
section_04
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_04_evidence_package.json
effect_size
TC synapse nearest-neighbor enrichment within 5–15 µm vs random.
review_repo
ComputationalReviewRecurrence
section_ref
wiki_page:computationalreviewrecurrence-04-translaminar
source_kind
review_finding
source_path
evidence/section_04_evidence_package.json
study_system
Mouse somatosensory cortex; large-scale array tomography volume reconstruction; parallel electron microscopy of L4 TC synapses
section_title
4. Translaminar excitatory loops in mouse — L4→L2/3→L5→L6→L4 within the column; asymmetry of forward and backward intracortical projections
evidence_summary
Large-scale array tomography of a 1.00 × 0.83 × 0.21 mm^3 volume of mouse S1, with parallel EM validation of L4 TC synapses.
review_bundle_ref
analysis_bundle:ab-d9c479db9be9
replication_status
single_study
review_package_ref
analysis_bundle:ab-d9c479db9be9
source_artifact_ref
wiki_page:computationalreviewrecurrence-04-translaminar
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_04_evidence_package.json
commit_sha
79ce062d54a924ce05953ec90aa9d26044d2b48f
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence
Raw fields (6)
claim_text
Thalamocortical synapses onto mouse L5 pyramidal neurons in S1 are biased toward basal dendrites with a secondary contribution onto proximal apical dendrites in L4, and they are clustered along individual dendritic branches rather than uniformly distributed.
raw_fields
{
  "n": 0,
  "doi": "10.3389/fncir.2013.00177",
  "claim": "Thalamocortical synapses onto mouse L5 pyramidal neurons in S1 are biased toward basal dendrites with a secondary contribution onto proximal apical dendrites in L4, and they are clustered along individual dendritic branches rather than uniformly distributed.",
  "cite_key": "Rah2013",
  "evidence": "Large-scale array tomography of a 1.00 × 0.83 × 0.21 mm^3 volume of mouse S1, with parallel EM validation of L4 TC synapses.",
  "effect_size": "TC synapse nearest-neighbor enrichment within 5–15 µm vs random.",
  "text_access": "abstract_only",
  "study_system": "Mouse somatosensory cortex; large-scale array tomography volume reconstruction; parallel electron microscopy of L4 TC synapses",
  "argument_role": "supporting",
  "replication_status": "single_study",
  "claim_source_sentence": "We found that TC synapses primarily target basal dendrites in layer 5, but also make a considerable input to proximal apical dendrites in L4, consistent with previous work. Our analysis further suggests that TC inputs are biased toward certain branches and, within branches, synapses show significant clustering with an excess of TC synapse nearest neighbors within 5-15 μm compared to a random distribution.",
  "source_provenance_status": "non_substring_match",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": "synapses show significant clustering with an excess of TC synapse nearest neighbors within 5-15 μm compared to a random distribution"
}
source_refs
[
  "paper:a3fcf790-bfc9-4b6d-a52d-f08e1ebfbc00"
]
source_span
We found that TC synapses primarily target basal dendrites in layer 5, but also make a considerable input to proximal apical dendrites in L4, consistent with previous work. Our analysis further suggests that TC inputs are biased toward certain branches and, within branches, synapses show significant clustering with an excess of TC synapse nearest neighbors within 5-15 μm compared to a random distribution.
evidence_refs
[
  {
    "ref": "paper:a3fcf790-bfc9-4b6d-a52d-f08e1ebfbc00"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}

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