Details

scope
mouse cortex, enhancer-AAV cell-subclass labeling toolkit
section_id
section_01
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_01_evidence_package.json
review_repo
ComputationalReviewRecurrence
section_ref
wiki_page:computationalreviewrecurrence-01-introduction
source_kind
review_finding
source_path
evidence/section_01_evidence_package.json
study_system
mouse cortex, enhancer-AAV cell-subclass labeling toolkit
section_title
1. Introduction — what "excitatory recurrence" means operationally in mouse cortex, and why isolating it from inhibition and from clinical framings is a defensible analytic move for basic-research synthesis
evidence_summary
Single-cell chromatin accessibility profiling, enhancer cloning into AAV, and intersectional combination with the Ai213 triple-reporter mouse.
review_bundle_ref
analysis_bundle:ab-d9c479db9be9
replication_status
replication_unknown
review_package_ref
analysis_bundle:ab-d9c479db9be9
source_artifact_ref
wiki_page:computationalreviewrecurrence-01-introduction
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_01_evidence_package.json
commit_sha
79ce062d54a924ce05953ec90aa9d26044d2b48f
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence
Raw fields (6)
claim_text
Cell-subclass-specific enhancers identified from single-cell chromatin-accessibility data and cloned into AAVs drive transgene expression in specific mouse cortical projection-neuron subclasses, and combined with a new triple-reporter Ai213 mouse, enable simultaneous labelling of three neuronal classes/subclasses in a single transgenic animal.
raw_fields
{
  "n": null,
  "doi": "10.1016/j.neuron.2021.03.011",
  "claim": "Cell-subclass-specific enhancers identified from single-cell chromatin-accessibility data and cloned into AAVs drive transgene expression in specific mouse cortical projection-neuron subclasses, and combined with a new triple-reporter Ai213 mouse, enable simultaneous labelling of three neuronal classes/subclasses in a single transgenic animal.",
  "cite_key": "Graybuck2021",
  "evidence": "Single-cell chromatin accessibility profiling, enhancer cloning into AAV, and intersectional combination with the Ai213 triple-reporter mouse.",
  "effect_size": null,
  "text_access": "abstract_only",
  "study_system": "mouse cortex, enhancer-AAV cell-subclass labeling toolkit",
  "argument_role": "supporting",
  "replication_status": "replication_unknown",
  "claim_source_sentence": "When cloned into recombinant adeno-associated viruses (AAVs) and delivered to the brain, these enhancers drive transgene expression in specific cortical cell subclasses. We extensively characterized several enhancer AAVs to show that they label different projection neuron subclasses... coupling enhancer viruses expressing recombinases to a newly generated transgenic mouse, Ai213, enables strong labeling of three different neuronal classes/subclasses in the brain of a single transgenic animal.",
  "source_provenance_status": "non_substring_match",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": null
}
source_refs
[
  "paper:paper-pm-33789083"
]
source_span
When cloned into recombinant adeno-associated viruses (AAVs) and delivered to the brain, these enhancers drive transgene expression in specific cortical cell subclasses. We extensively characterized several enhancer AAVs to show that they label different projection neuron subclasses... coupling enhancer viruses expressing recombinases to a newly generated transgenic mouse, Ai213, enables strong labeling of three dif...
evidence_refs
[
  {
    "ref": "paper:paper-pm-33789083"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}

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