Details

scope
Tcf4+/tr mouse model of Pitt-Hopkins; bulk RNA-seq + IHC + electrophysiology
section_id
section_01
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_01_evidence_package.json
review_repo
ComputationalReviewVIP
section_ref
wiki_page:computationalreviewvip-01-introduction
source_kind
review_finding
source_path
evidence/section_01_evidence_package.json
study_system
Tcf4+/tr mouse model of Pitt-Hopkins; bulk RNA-seq + IHC + electrophysiology
section_title
Introduction
evidence_summary
Tcf4+/tr mouse model; CSEA + cellular deconvolution from bulk RNA-seq across 5 PTHS mouse models; IHC quantification with subtype markers; electrophysiology of E/I balance.
review_bundle_ref
analysis_bundle:ab-2ce40c33e827
replication_status
replication_unknown
review_package_ref
analysis_bundle:ab-2ce40c33e827
source_artifact_ref
wiki_page:computationalreviewvip-01-introduction
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_01_evidence_package.json
commit_sha
95e761177f7d2ec565983d3307c14ec238f9677c
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP
Raw fields (6)
claim_text
Heterozygous TCF4 loss (Tcf4+/tr Pitt-Hopkins mouse model) selectively reduces PV+, VIP+, cortistatin+, and ChAT+ interneurons—but spares SST+ interneurons—causing cell-type-specific E/I imbalance onto PV+ and VIP+ INs and pyramidal neurons, evidence that a single transcription factor differentially regulates discrete molecularly-defined interneuron subclasses.
raw_fields
{
  "n": null,
  "doi": "10.1038/s41380-023-02248-z",
  "claim": "Heterozygous TCF4 loss (Tcf4+/tr Pitt-Hopkins mouse model) selectively reduces PV+, VIP+, cortistatin+, and ChAT+ interneurons—but spares SST+ interneurons—causing cell-type-specific E/I imbalance onto PV+ and VIP+ INs and pyramidal neurons, evidence that a single transcription factor differentially regulates discrete molecularly-defined interneuron subclasses.",
  "title": null,
  "cite_key": "Chen2023b",
  "evidence": "Tcf4+/tr mouse model; CSEA + cellular deconvolution from bulk RNA-seq across 5 PTHS mouse models; IHC quantification with subtype markers; electrophysiology of E/I balance.",
  "effect_size": null,
  "text_access": "abstract_only",
  "study_system": "Tcf4+/tr mouse model of Pitt-Hopkins; bulk RNA-seq + IHC + electrophysiology",
  "target_section": "section_03",
  "_source_cluster": "cluster_01_molecular_taxonomy",
  "replication_status": "replication_unknown",
  "_source_cluster_index": 99,
  "claim_source_sentence": "In Tcf4+/tr mice, immunohistochemical (IHC) analysis of subtype-specific IN markers and reporter mice identified reductions in PV+, vasoactive intestinal peptide (VIP+), and cortistatin (CST+) expressing INs in the cortex and cholinergic (ChAT+) INs in the striatum, with the somatostatin (SST+) IN population being spared.",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": null
}
source_refs
[
  "paper:paper-bcba2772b0e0"
]
source_span
In Tcf4+/tr mice, immunohistochemical (IHC) analysis of subtype-specific IN markers and reporter mice identified reductions in PV+, vasoactive intestinal peptide (VIP+), and cortistatin (CST+) expressing INs in the cortex and cholinergic (ChAT+) INs in the striatum, with the somatostatin (SST+) IN population being spared.
evidence_refs
[
  {
    "ref": "paper:paper-bcba2772b0e0"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}

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