Version history

{
  "scope": "mouse isocortex and hippocampal formation",
  "claim_text": "The mouse isocortex and hippocampal formation contain a Pvalb subclass that divides into 3 supertypes, including a hippocampus-specific Pvalb chandelier cell cluster with unique markers Ntf3 and Sntb1.",
  "raw_fields": {
    "n": 1300000,
    "doi": "10.1016/j.cell.2021.04.021",
    "claim": "The mouse isocortex and hippocampal formation contain a Pvalb subclass that divides into 3 supertypes, including a hippocampus-specific Pvalb chandelier cell cluster with unique markers Ntf3 and Sntb1.",
    "evidence": "Profiled ~1.3 million cells covering adult mouse isocortex and HPF using scRNA-seq to create comprehensive transcriptomic taxonomy.",
    "effect_size": "~1.3 million cells profiled; Pvalb divided into 3 supertypes",
    "text_access": "fulltext",
    "study_system": "mouse isocortex and hippocampal formation",
    "replication_status": "independently_replicated",
    "claim_source_sentence": "the Sst and Pvalb subclasses are divided into 11 and 3 supertypes, respectively. We also identified a HIP-specific Pvalb chandelier cell cluster #122 with unique markers Ntf3 and Sntb1.",
    "replication_evidence_dois": [
      "10.1038/s41586-023-06812-z"
    ],
    "effect_size_source_sentence": "We profiled ~1.3 million cells covering the entire adult mouse isocortex and HPF and derived a transcriptomic cell type taxonomy."
  },
  "section_id": "section_02_evidence_package",
  "source_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewPV/blob/df9fc7e8d455b084152c9d713558dae0013cef21/evidence/section_02_evidence_package.json",
  "effect_size": "~1.3 million cells profiled; Pvalb divided into 3 supertypes",
  "review_repo": "ComputationalReviewPV",
  "section_ref": "wiki_page:computationalreviewpv-02",
  "source_kind": "review_finding",
  "source_path": "evidence/section_02_evidence_package.json",
  "source_refs": [
    "paper:paper-4dfe44516146"
  ],
  "source_span": "the Sst and Pvalb subclasses are divided into 11 and 3 supertypes, respectively. We also identified a HIP-specific Pvalb chandelier cell cluster #122 with unique markers Ntf3 and Sntb1.",
  "study_system": "mouse isocortex and hippocampal formation",
  "evidence_refs": [
    {
      "ref": "paper:paper-4dfe44516146"
    }
  ],
  "section_title": "Molecular Identity and Transcriptomic Taxonomy",
  "source_policy": {
    "mode": "public_source_pointer_with_short_context",
    "notes": [
      "Local review repositories are read-only inputs.",
      "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
    ],
    "source_commit_sha": "df9fc7e8d455b084152c9d713558dae0013cef21",
    "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewPV"
  },
  "evidence_summary": "Profiled ~1.3 million cells covering adult mouse isocortex and HPF using scRNA-seq to create comprehensive transcriptomic taxonomy.",
  "review_bundle_ref": "analysis_bundle:ab-e6261c8263e7",
  "replication_status": "independently_replicated",
  "review_package_ref": "analysis_bundle:ab-e6261c8263e7",
  "source_artifact_ref": "wiki_page:computationalreviewpv-02",
  "origin_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewPV/blob/df9fc7e8d455b084152c9d713558dae0013cef21/evidence/section_02_evidence_package.json",
  "commit_sha": "df9fc7e8d455b084152c9d713558dae0013cef21",
  "created_by": "persona-jerome-lecoq-gbo-neuroscience",
  "repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewPV"
}