Version history

{
  "scope": "Mouse brain reference atlas (C57BL/6J adult)",
  "claim_text": "The Allen Mouse Brain Common Coordinate Framework (CCFv3) is a 10-μm-resolution 3D reference atlas built from 1,675 mouse brains and parcellates the brain into 43 isocortical areas and 329 subcortical structures.",
  "raw_fields": {
    "n": 1675,
    "doi": "10.1016/j.cell.2020.04.007",
    "claim": "The Allen Mouse Brain Common Coordinate Framework (CCFv3) is a 10-μm-resolution 3D reference atlas built from 1,675 mouse brains and parcellates the brain into 43 isocortical areas and 329 subcortical structures.",
    "cite_key": "Wang2020a",
    "evidence": "CCFv3 is the canonical 3D mouse-brain reference atlas underpinning all Allen mesoscale and BICCN projects.",
    "effect_size": "1,675 brains; 43 isocortical areas; 329 subcortical gray matter structures; 81 fiber tracts",
    "text_access": "abstract_only",
    "study_system": "Mouse brain reference atlas (C57BL/6J adult)",
    "source_cluster_id": "cluster_11",
    "replication_status": "replication_unknown",
    "claim_source_sentence": "We constructed an average template brain at 10 μm voxel resolution by interpolating high resolution in-plane serial two-photon tomography images with 100 μm z-sampling from 1,675 young adult C57BL/6J mice.",
    "replication_evidence_dois": [],
    "effect_size_source_sentence": "Then, using multimodal reference data, we parcellated the entire brain directly in 3D, labeling every voxel with a brain structure spanning 43 isocortical areas and their layers, 329 subcortical gray matter structures, 81 fiber tracts, and 8 ventricular structures."
  },
  "section_id": "section_12",
  "source_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewLoops/blob/0632aae8abc141909207fe91f6349b9e36489c3b/evidence/section_12_evidence_package.json",
  "effect_size": "1,675 brains; 43 isocortical areas; 329 subcortical gray matter structures; 81 fiber tracts",
  "review_repo": "ComputationalReviewLoops",
  "section_ref": "wiki_page:computationalreviewloops-12",
  "source_kind": "review_finding",
  "source_path": "evidence/section_12_evidence_package.json",
  "source_refs": [
    "paper:paper-01b43f29f560"
  ],
  "source_span": "We constructed an average template brain at 10 μm voxel resolution by interpolating high resolution in-plane serial two-photon tomography images with 100 μm z-sampling from 1,675 young adult C57BL/6J mice.",
  "study_system": "Mouse brain reference atlas (C57BL/6J adult)",
  "evidence_refs": [
    {
      "ref": "paper:paper-01b43f29f560"
    }
  ],
  "section_title": "Whole-Brain Connectomics: Mouse, Primate, Human",
  "source_policy": {
    "mode": "public_source_pointer_with_short_context",
    "notes": [
      "Local review repositories are read-only inputs.",
      "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
    ],
    "source_commit_sha": "0632aae8abc141909207fe91f6349b9e36489c3b",
    "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewLoops"
  },
  "evidence_summary": "CCFv3 is the canonical 3D mouse-brain reference atlas underpinning all Allen mesoscale and BICCN projects.",
  "review_bundle_ref": "analysis_bundle:ab-d49e54403ef9",
  "replication_status": "replication_unknown",
  "review_package_ref": "analysis_bundle:ab-d49e54403ef9",
  "source_artifact_ref": "wiki_page:computationalreviewloops-12",
  "origin_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewLoops/blob/0632aae8abc141909207fe91f6349b9e36489c3b/evidence/section_12_evidence_package.json",
  "commit_sha": "0632aae8abc141909207fe91f6349b9e36489c3b",
  "created_by": "persona-jerome-lecoq-gbo-neuroscience",
  "repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewLoops"
}