Details

scope
Mouse brain reference atlas (C57BL/6J adult)
claim_text
The Allen Mouse Brain Common Coordinate Framework (CCFv3) is a 10-μm-resolution 3D reference atlas built from 1,675 mouse brains and parcellates the brain into 43 isocortical areas and 329 subcortical structures.
section_id
section_12
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewLoops/blob/0632aae8abc141909207fe91f6349b9e36489c3b/evidence/section_12_evidence_package.json
effect_size
1,675 brains; 43 isocortical areas; 329 subcortical gray matter structures; 81 fiber tracts
review_repo
ComputationalReviewLoops
section_ref
wiki_page:computationalreviewloops-12
source_kind
review_finding
source_path
evidence/section_12_evidence_package.json
source_span
We constructed an average template brain at 10 μm voxel resolution by interpolating high resolution in-plane serial two-photon tomography images with 100 μm z-sampling from 1,675 young adult C57BL/6J mice.
study_system
Mouse brain reference atlas (C57BL/6J adult)
section_title
Whole-Brain Connectomics: Mouse, Primate, Human
evidence_summary
CCFv3 is the canonical 3D mouse-brain reference atlas underpinning all Allen mesoscale and BICCN projects.
review_bundle_ref
analysis_bundle:ab-d49e54403ef9
replication_status
replication_unknown
review_package_ref
analysis_bundle:ab-d49e54403ef9
source_artifact_ref
wiki_page:computationalreviewloops-12
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewLoops/blob/0632aae8abc141909207fe91f6349b9e36489c3b/evidence/section_12_evidence_package.json
commit_sha
0632aae8abc141909207fe91f6349b9e36489c3b
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewLoops
Raw fields (4)
raw_fields
{
  "n": 1675,
  "doi": "10.1016/j.cell.2020.04.007",
  "claim": "The Allen Mouse Brain Common Coordinate Framework (CCFv3) is a 10-μm-resolution 3D reference atlas built from 1,675 mouse brains and parcellates the brain into 43 isocortical areas and 329 subcortical structures.",
  "cite_key": "Wang2020a",
  "evidence": "CCFv3 is the canonical 3D mouse-brain reference atlas underpinning all Allen mesoscale and BICCN projects.",
  "effect_size": "1,675 brains; 43 isocortical areas; 329 subcortical gray matter structures; 81 fiber tracts",
  "text_access": "abstract_only",
  "study_system": "Mouse brain reference atlas (C57BL/6J adult)",
  "source_cluster_id": "cluster_11",
  "replication_status": "replication_unknown",
  "claim_source_sentence": "We constructed an average template brain at 10 μm voxel resolution by interpolating high resolution in-plane serial two-photon tomography images with 100 μm z-sampling from 1,675 young adult C57BL/6J mice.",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": "Then, using multimodal reference data, we parcellated the entire brain directly in 3D, labeling every voxel with a brain structure spanning 43 isocortical areas and their layers, 329 subcortical gray matter structures, 81 fiber tracts, and 8 ventricular structures."
}
source_refs
[
  "paper:paper-01b43f29f560"
]
evidence_refs
[
  {
    "ref": "paper:paper-01b43f29f560"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "0632aae8abc141909207fe91f6349b9e36489c3b",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewLoops"
}

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