Details
- scope
- Mouse brain reference atlas (C57BL/6J adult)
- claim_text
- The Allen Mouse Brain Common Coordinate Framework (CCFv3) is a 10-μm-resolution 3D reference atlas built from 1,675 mouse brains and parcellates the brain into 43 isocortical areas and 329 subcortical structures.
- section_id
- section_12
- source_url
- https://github.com/AllenNeuralDynamics/ComputationalReviewLoops/blob/0632aae8abc141909207fe91f6349b9e36489c3b/evidence/section_12_evidence_package.json
- effect_size
- 1,675 brains; 43 isocortical areas; 329 subcortical gray matter structures; 81 fiber tracts
- review_repo
- ComputationalReviewLoops
- section_ref
- wiki_page:computationalreviewloops-12
- source_kind
- review_finding
- source_path
- evidence/section_12_evidence_package.json
- source_span
- We constructed an average template brain at 10 μm voxel resolution by interpolating high resolution in-plane serial two-photon tomography images with 100 μm z-sampling from 1,675 young adult C57BL/6J mice.
- study_system
- Mouse brain reference atlas (C57BL/6J adult)
- section_title
- Whole-Brain Connectomics: Mouse, Primate, Human
- evidence_summary
- CCFv3 is the canonical 3D mouse-brain reference atlas underpinning all Allen mesoscale and BICCN projects.
- review_bundle_ref
- analysis_bundle:ab-d49e54403ef9
- replication_status
- replication_unknown
- review_package_ref
- analysis_bundle:ab-d49e54403ef9
- source_artifact_ref
- wiki_page:computationalreviewloops-12
- origin_url
- https://github.com/AllenNeuralDynamics/ComputationalReviewLoops/blob/0632aae8abc141909207fe91f6349b9e36489c3b/evidence/section_12_evidence_package.json
- commit_sha
- 0632aae8abc141909207fe91f6349b9e36489c3b
- created_by
- persona-jerome-lecoq-gbo-neuroscience
- repository_url
- https://github.com/AllenNeuralDynamics/ComputationalReviewLoops
Raw fields (4)
- raw_fields
{ "n": 1675, "doi": "10.1016/j.cell.2020.04.007", "claim": "The Allen Mouse Brain Common Coordinate Framework (CCFv3) is a 10-μm-resolution 3D reference atlas built from 1,675 mouse brains and parcellates the brain into 43 isocortical areas and 329 subcortical structures.", "cite_key": "Wang2020a", "evidence": "CCFv3 is the canonical 3D mouse-brain reference atlas underpinning all Allen mesoscale and BICCN projects.", "effect_size": "1,675 brains; 43 isocortical areas; 329 subcortical gray matter structures; 81 fiber tracts", "text_access": "abstract_only", "study_system": "Mouse brain reference atlas (C57BL/6J adult)", "source_cluster_id": "cluster_11", "replication_status": "replication_unknown", "claim_source_sentence": "We constructed an average template brain at 10 μm voxel resolution by interpolating high resolution in-plane serial two-photon tomography images with 100 μm z-sampling from 1,675 young adult C57BL/6J mice.", "replication_evidence_dois": [], "effect_size_source_sentence": "Then, using multimodal reference data, we parcellated the entire brain directly in 3D, labeling every voxel with a brain structure spanning 43 isocortical areas and their layers, 329 subcortical gray matter structures, 81 fiber tracts, and 8 ventricular structures." }- source_refs
[ "paper:paper-01b43f29f560" ]
- evidence_refs
[ { "ref": "paper:paper-01b43f29f560" } ]- source_policy
{ "mode": "public_source_pointer_with_short_context", "notes": [ "Local review repositories are read-only inputs.", "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose." ], "source_commit_sha": "0632aae8abc141909207fe91f6349b9e36489c3b", "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewLoops" }