Details

scope
Mouse visual cortex (V1, AL, RL); MICrONS EM reconstructions of excitatory neurons
section_id
section_15
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_15_evidence_package.json
effect_size
>30,000 excitatory neurons reconstructed across V1, AL, RL
review_repo
ComputationalReviewRecurrence
section_ref
wiki_page:computationalreviewrecurrence-15-methods-limits
source_kind
review_finding
source_path
evidence/section_15_evidence_package.json
study_system
Mouse visual cortex (V1, AL, RL); MICrONS EM reconstructions of excitatory neurons
evidence_summary
Reanalysis of MICrONS that revises a structural claim drawn from earlier smaller datasets — relevant to cluster_14 synthesis on what large-scale connectomics actually supports.
review_bundle_ref
analysis_bundle:ab-d9c479db9be9
replication_status
single-study
review_package_ref
analysis_bundle:ab-d9c479db9be9
source_artifact_ref
wiki_page:computationalreviewrecurrence-15-methods-limits
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_15_evidence_package.json
commit_sha
79ce062d54a924ce05953ec90aa9d26044d2b48f
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence
Raw fields (7)
claim_text
Data-driven analysis of >30,000 EM-reconstructed mouse-V1/AL/RL excitatory neurons argues that cortical excitatory morphology is better described as a continuum than as discrete m-types — challenging the discrete-type framing used in many E→E claims.
raw_fields
{
  "n": 30000,
  "doi": "10.1038/s41467-025-58763-w",
  "claim": "Data-driven analysis of >30,000 EM-reconstructed mouse-V1/AL/RL excitatory neurons argues that cortical excitatory morphology is better described as a continuum than as discrete m-types — challenging the discrete-type framing used in many E→E claims.",
  "cite_key": "Weis2025",
  "evidence": "Reanalysis of MICrONS that revises a structural claim drawn from earlier smaller datasets — relevant to cluster_14 synthesis on what large-scale connectomics actually supports.",
  "effect_size": ">30,000 excitatory neurons reconstructed across V1, AL, RL",
  "text_access": "abstract_only",
  "study_system": "Mouse visual cortex (V1, AL, RL); MICrONS EM reconstructions of excitatory neurons",
  "argument_role": "supporting",
  "replication_status": "single-study",
  "claim_source_sentence": "Contrary to previous classifications into discrete morphological types (m-types), our data-driven approach suggests that the morphological landscape of cortical excitatory neurons is better described as a continuum, with a few notable exceptions in layers 5 and 6.",
  "source_provenance_status": "non_substring_match",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": "Here, we took a data-driven approach using graph-based machine learning methods to obtain a low-dimensional morphological \"bar code\" describing more than 30,000 excitatory neurons in mouse visual areas V1, AL, and RL that were reconstructed from the millimeter scale MICrONS serial-section electron microscopy volume."
}
source_refs
[
  "paper:paper-4be2ac5ab52e"
]
source_span
Contrary to previous classifications into discrete morphological types (m-types), our data-driven approach suggests that the morphological landscape of cortical excitatory neurons is better described as a continuum, with a few notable exceptions in layers 5 and 6.
evidence_refs
[
  {
    "ref": "paper:paper-4be2ac5ab52e"
  }
]
section_title
15. Methodological limits and emerging tools — what current mouse-cortex tools cannot yet measure about E→E recurrence (subthreshold network activity, fast plasticity in vivo, millimetre-scale dynamic connectomes), and what is on the near horizon
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}

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