Version history

{
  "scope": "mouse neocortical pyramidal cells and interneurons",
  "claim_text": "Patch-seq reveals a close link between electrophysiological characteristics, pharmacological responses, and RNA expression of neurotransmitter receptors and channels, distinguishing both established and novel neuronal subtypes.",
  "raw_fields": {
    "n": 0,
    "doi": "10.1038/nbt.3443",
    "claim": "Patch-seq reveals a close link between electrophysiological characteristics, pharmacological responses, and RNA expression of neurotransmitter receptors and channels, distinguishing both established and novel neuronal subtypes.",
    "evidence": "Method combining whole-cell patch-clamp with full transcriptome sequencing from single neocortical neurons after electrophysiological recording in mouse brain slices.",
    "effect_size": "novel neuronal subtypes distinguished by combined electrophysiology-transcriptomics",
    "text_access": "fulltext",
    "study_system": "mouse neocortical pyramidal cells and interneurons",
    "replication_status": "independently_replicated",
    "claim_source_sentence": "We show that Patch-seq reveals a close link between electrophysiological characteristics, responses to acute chemical challenges and RNA expression of neurotransmitter receptors and channels.",
    "replication_evidence_dois": [
      "10.1016/j.cell.2020.09.057",
      "10.7554/elife.65482"
    ],
    "effect_size_source_sentence": "it distinguishes neuronal subpopulations that correspond to both well-established and, to our knowledge, hitherto undescribed neuronal subtypes."
  },
  "section_id": "section_05_evidence_package",
  "source_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewPV/blob/df9fc7e8d455b084152c9d713558dae0013cef21/evidence/section_05_evidence_package.json",
  "effect_size": "novel neuronal subtypes distinguished by combined electrophysiology-transcriptomics",
  "review_repo": "ComputationalReviewPV",
  "section_ref": "wiki_page:computationalreviewpv-05",
  "source_kind": "review_finding",
  "source_path": "evidence/section_05_evidence_package.json",
  "source_refs": [
    "paper:paper-fd924ebdd0c4"
  ],
  "source_span": "We show that Patch-seq reveals a close link between electrophysiological characteristics, responses to acute chemical challenges and RNA expression of neurotransmitter receptors and channels.",
  "study_system": "mouse neocortical pyramidal cells and interneurons",
  "evidence_refs": [
    {
      "ref": "paper:paper-fd924ebdd0c4"
    }
  ],
  "section_title": "Intrinsic Electrophysiology: The Fast-Spiking Phenotype and Its Variants",
  "source_policy": {
    "mode": "public_source_pointer_with_short_context",
    "notes": [
      "Local review repositories are read-only inputs.",
      "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
    ],
    "source_commit_sha": "df9fc7e8d455b084152c9d713558dae0013cef21",
    "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewPV"
  },
  "evidence_summary": "Method combining whole-cell patch-clamp with full transcriptome sequencing from single neocortical neurons after electrophysiological recording in mouse brain slices.",
  "review_bundle_ref": "analysis_bundle:ab-e6261c8263e7",
  "replication_status": "independently_replicated",
  "review_package_ref": "analysis_bundle:ab-e6261c8263e7",
  "source_artifact_ref": "wiki_page:computationalreviewpv-05",
  "origin_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewPV/blob/df9fc7e8d455b084152c9d713558dae0013cef21/evidence/section_05_evidence_package.json",
  "commit_sha": "df9fc7e8d455b084152c9d713558dae0013cef21",
  "created_by": "persona-jerome-lecoq-gbo-neuroscience",
  "repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewPV"
}