Details

scope
human middle temporal gyrus and mouse cortex; snRNA-seq
section_id
section_15
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewLoops/blob/0632aae8abc141909207fe91f6349b9e36489c3b/evidence/section_15_evidence_package.json
effect_size
extensive divergence in proportions, laminar distributions, gene expression and morphology between homologous human and mouse cell types
review_repo
ComputationalReviewLoops
section_ref
wiki_page:computationalreviewloops-15
source_kind
review_finding
source_path
evidence/section_15_evidence_package.json
source_span
Despite this general conservation, we also found extensive differences between homologous human and mouse cell types, including marked alterations in proportions, laminar distributions, gene expression and morphology.
study_system
human middle temporal gyrus and mouse cortex; snRNA-seq
section_title
Species Differences and Evolutionary Scaling of Loop Architecture
evidence_summary
snRNA-seq of human middle temporal gyrus compared to similar mouse cortex datasets identified well-conserved cell-type taxonomy with extensive species-specific divergence in expression and morphology.
review_bundle_ref
analysis_bundle:ab-d49e54403ef9
replication_status
independently_replicated
review_package_ref
analysis_bundle:ab-d49e54403ef9
source_artifact_ref
wiki_page:computationalreviewloops-15
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewLoops/blob/0632aae8abc141909207fe91f6349b9e36489c3b/evidence/section_15_evidence_package.json
commit_sha
0632aae8abc141909207fe91f6349b9e36489c3b
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewLoops
Raw fields (5)
claim_text
Single-nucleus RNA sequencing of the human middle temporal gyrus identified a highly diverse set of excitatory and inhibitory neuron types whose homologs are surprisingly well conserved with mouse cortex, but homologous types differ in proportions, laminar distributions, gene expression and morphology.
raw_fields
{
  "n": 0,
  "doi": "10.1038/s41586-019-1506-7",
  "claim": "Single-nucleus RNA sequencing of the human middle temporal gyrus identified a highly diverse set of excitatory and inhibitory neuron types whose homologs are surprisingly well conserved with mouse cortex, but homologous types differ in proportions, laminar distributions, gene expression and morphology.",
  "cite_key": "Hodge2019",
  "evidence": "snRNA-seq of human middle temporal gyrus compared to similar mouse cortex datasets identified well-conserved cell-type taxonomy with extensive species-specific divergence in expression and morphology.",
  "effect_size": "extensive divergence in proportions, laminar distributions, gene expression and morphology between homologous human and mouse cell types",
  "text_access": "fulltext",
  "study_system": "human middle temporal gyrus and mouse cortex; snRNA-seq",
  "source_cluster_id": "cluster_14",
  "replication_status": "independently_replicated",
  "claim_source_sentence": "Despite this general conservation, we also found extensive differences between homologous human and mouse cell types, including marked alterations in proportions, laminar distributions, gene expression and morphology.",
  "replication_evidence_dois": [
    "10.1038/s41586-021-03465-8",
    "10.1126/science.ade9516"
  ],
  "effect_size_source_sentence": "Despite this general conservation, we also found extensive differences between homologous human and mouse cell types, including marked alterations in proportions, laminar distributions, gene expression and morphology."
}
source_refs
[
  "paper:paper-pm-31435019"
]
evidence_refs
[
  {
    "ref": "paper:paper-pm-31435019"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "0632aae8abc141909207fe91f6349b9e36489c3b",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewLoops"
}

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