Version history

{
  "scope": "whole adult mouse brain",
  "claim_text": "Whole mouse brain atlas identifies 5,200 transcriptomic cell type clusters from ~7 million scRNA-seq cells and ~4.3 million MERFISH cells.",
  "raw_fields": {
    "n": 7000000,
    "doi": "10.1038/s41586-023-06812-z",
    "claim": "Whole mouse brain atlas identifies 5,200 transcriptomic cell type clusters from ~7 million scRNA-seq cells and ~4.3 million MERFISH cells.",
    "evidence": "",
    "effect_size": "~7 million scRNA-seq cells; ~4.3 million MERFISH cells; 5,200 clusters",
    "text_access": "abstract_only",
    "study_system": "whole adult mouse brain",
    "replication_status": "replication_unknown",
    "claim_source_sentence": "The atlas is hierarchically organized into five nested levels of classification: 7 divisions, 32 classes, 306 subclasses, 1,045 supertypes and 5,200 clusters.",
    "replication_evidence_dois": [],
    "effect_size_source_sentence": "a single-cell RNA-sequencing (scRNA-seq) dataset of ~7 million cells profiled, and a spatially resolved transcriptomic dataset of ~4.3 million cells using MERFISH"
  },
  "section_id": "section_02_evidence_package",
  "source_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewPV/blob/df9fc7e8d455b084152c9d713558dae0013cef21/evidence/section_02_evidence_package.json",
  "effect_size": "~7 million scRNA-seq cells; ~4.3 million MERFISH cells; 5,200 clusters",
  "review_repo": "ComputationalReviewPV",
  "section_ref": "wiki_page:computationalreviewpv-02",
  "source_kind": "review_finding",
  "source_path": "evidence/section_02_evidence_package.json",
  "source_refs": [
    "paper:1f98e15e-de06-42f7-9da8-1faa69bba835"
  ],
  "source_span": "The atlas is hierarchically organized into five nested levels of classification: 7 divisions, 32 classes, 306 subclasses, 1,045 supertypes and 5,200 clusters.",
  "study_system": "whole adult mouse brain",
  "evidence_refs": [
    {
      "ref": "paper:1f98e15e-de06-42f7-9da8-1faa69bba835"
    }
  ],
  "section_title": "Molecular Identity and Transcriptomic Taxonomy",
  "source_policy": {
    "mode": "public_source_pointer_with_short_context",
    "notes": [
      "Local review repositories are read-only inputs.",
      "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
    ],
    "source_commit_sha": "df9fc7e8d455b084152c9d713558dae0013cef21",
    "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewPV"
  },
  "evidence_summary": "",
  "review_bundle_ref": "analysis_bundle:ab-e6261c8263e7",
  "replication_status": "replication_unknown",
  "review_package_ref": "analysis_bundle:ab-e6261c8263e7",
  "source_artifact_ref": "wiki_page:computationalreviewpv-02",
  "origin_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewPV/blob/df9fc7e8d455b084152c9d713558dae0013cef21/evidence/section_02_evidence_package.json",
  "commit_sha": "df9fc7e8d455b084152c9d713558dae0013cef21",
  "created_by": "persona-jerome-lecoq-gbo-neuroscience",
  "repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewPV"
}