Details
- scope
- whole adult mouse brain
- claim_text
- Whole mouse brain atlas identifies 5,200 transcriptomic cell type clusters from ~7 million scRNA-seq cells and ~4.3 million MERFISH cells.
- section_id
- section_02_evidence_package
- source_url
- https://github.com/AllenNeuralDynamics/ComputationalReviewPV/blob/df9fc7e8d455b084152c9d713558dae0013cef21/evidence/section_02_evidence_package.json
- effect_size
- ~7 million scRNA-seq cells; ~4.3 million MERFISH cells; 5,200 clusters
- review_repo
- ComputationalReviewPV
- section_ref
- wiki_page:computationalreviewpv-02
- source_kind
- review_finding
- source_path
- evidence/section_02_evidence_package.json
- source_span
- The atlas is hierarchically organized into five nested levels of classification: 7 divisions, 32 classes, 306 subclasses, 1,045 supertypes and 5,200 clusters.
- study_system
- whole adult mouse brain
- section_title
- Molecular Identity and Transcriptomic Taxonomy
- evidence_summary
- review_bundle_ref
- analysis_bundle:ab-e6261c8263e7
- replication_status
- replication_unknown
- review_package_ref
- analysis_bundle:ab-e6261c8263e7
- source_artifact_ref
- wiki_page:computationalreviewpv-02
- origin_url
- https://github.com/AllenNeuralDynamics/ComputationalReviewPV/blob/df9fc7e8d455b084152c9d713558dae0013cef21/evidence/section_02_evidence_package.json
- commit_sha
- df9fc7e8d455b084152c9d713558dae0013cef21
- created_by
- persona-jerome-lecoq-gbo-neuroscience
- repository_url
- https://github.com/AllenNeuralDynamics/ComputationalReviewPV
Raw fields (4)
- raw_fields
{ "n": 7000000, "doi": "10.1038/s41586-023-06812-z", "claim": "Whole mouse brain atlas identifies 5,200 transcriptomic cell type clusters from ~7 million scRNA-seq cells and ~4.3 million MERFISH cells.", "evidence": "", "effect_size": "~7 million scRNA-seq cells; ~4.3 million MERFISH cells; 5,200 clusters", "text_access": "abstract_only", "study_system": "whole adult mouse brain", "replication_status": "replication_unknown", "claim_source_sentence": "The atlas is hierarchically organized into five nested levels of classification: 7 divisions, 32 classes, 306 subclasses, 1,045 supertypes and 5,200 clusters.", "replication_evidence_dois": [], "effect_size_source_sentence": "a single-cell RNA-sequencing (scRNA-seq) dataset of ~7 million cells profiled, and a spatially resolved transcriptomic dataset of ~4.3 million cells using MERFISH" }- source_refs
[ "paper:1f98e15e-de06-42f7-9da8-1faa69bba835" ]
- evidence_refs
[ { "ref": "paper:1f98e15e-de06-42f7-9da8-1faa69bba835" } ]- source_policy
{ "mode": "public_source_pointer_with_short_context", "notes": [ "Local review repositories are read-only inputs.", "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose." ], "source_commit_sha": "df9fc7e8d455b084152c9d713558dae0013cef21", "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewPV" }