Version history

{
  "scope": "mouse M1",
  "claim_text": "2a ) were performed on wild-type C57Bl/6 ( n = 27), Viaat -Cre/Ai9 (vesicular inhibitory amino acid transporter, encoded by the Slc32a1 gene, n = 24), Sst -Cre/Ai9 (somatostatin, n = 75), Vip -Cre/Ai9 (vasoactive intestinal polypeptide, n = 46), Pvalb -Cre/Ai9 (parvalbumin, n = 76), Npy -Cre/Ai9 (neuropeptide Y, n = 2), Vipr2 -Cre/Ai9 (vasoactive intestinal peptide receptor 2, n = 7), Scl17a8 -Cre/Ai9 (VGLUT3, vesicular glutamate transporter 3, n = 6), Gnb4 -Cre/Ai9 ( n = 1), and Slc17a8 -iCre/Ai9 ( n = 2) mice.",
  "raw_fields": {
    "n": 27,
    "doi": "10.1038/s41586-020-2907-3",
    "year": "2020",
    "claim": "2a ) were performed on wild-type C57Bl/6 ( n = 27), Viaat -Cre/Ai9 (vesicular inhibitory amino acid transporter, encoded by the Slc32a1 gene, n = 24), Sst -Cre/Ai9 (somatostatin, n = 75), Vip -Cre/Ai9 (vasoactive intestinal polypeptide, n = 46), Pvalb -Cre/Ai9 (parvalbumin, n = 76), Npy -Cre/Ai9 (neuropeptide Y, n = 2), Vipr2 -Cre/Ai9 (vasoactive intestinal peptide receptor 2, n = 7), Scl17a8 -Cre/Ai9 (VGLUT3, vesicular glutamate transporter 3, n = 6), Gnb4 -Cre/Ai9 ( n = 1), and Slc17a8 -iCre/Ai9 ( n = 2) mice.",
    "title": null,
    "journal": "Nature",
    "cite_key": "Scala2021",
    "evidence": "Phenotypic variation of transcriptomic cell types in mouse motor cortex",
    "effect_size": null,
    "text_access": "fulltext",
    "study_system": "mouse M1",
    "_source_cluster": "cluster_06_disinhibition_circuit",
    "snowball_origin": "forward",
    "replication_status": "replication_unknown",
    "_source_cluster_index": 75,
    "claim_source_sentence": "2a ) were performed on wild-type C57Bl/6 ( n = 27), Viaat -Cre/Ai9 (vesicular inhibitory amino acid transporter, encoded by the Slc32a1 gene, n = 24), Sst -Cre/Ai9 (somatostatin, n = 75), Vip -Cre/Ai9 (vasoactive intestinal polypeptide, n = 46), Pvalb -Cre/Ai9 (parvalbumin, n = 76), Npy -Cre/Ai9 (neuropeptide Y, n = 2), Vipr2 -Cre/Ai9 (vasoactive intestinal peptide receptor 2, n = 7), Scl17a8 -Cre/Ai9 (VGLUT3, vesicular glutamate transporter 3, n = 6), Gnb4 -Cre/Ai9 ( n = 1), and Slc17a8 -iCre/Ai9 ( n = 2) mice.",
    "replication_evidence_dois": [],
    "effect_size_source_sentence": "Total number of neurons, 1,187 (for some cells soma depth could not be measured owing to failed staining). c , t-SNE representation of CGE-derived interneurons from the single-cell 10x v2 reference data set ( n = 15,511; perplexity, 30). t-Type names are shortened by omitting the first word; some are abbreviated."
  },
  "section_id": "section_12",
  "source_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_12_evidence_package.json",
  "effect_size": null,
  "review_repo": "ComputationalReviewVIP",
  "section_ref": "wiki_page:computationalreviewvip-12-computational-models",
  "source_kind": "review_finding",
  "source_path": "evidence/section_12_evidence_package.json",
  "source_refs": [
    "paper:paper-be132b319290"
  ],
  "source_span": "2a ) were performed on wild-type C57Bl/6 ( n = 27), Viaat -Cre/Ai9 (vesicular inhibitory amino acid transporter, encoded by the Slc32a1 gene, n = 24), Sst -Cre/Ai9 (somatostatin, n = 75), Vip -Cre/Ai9 (vasoactive intestinal polypeptide, n = 46), Pvalb -Cre/Ai9 (parvalbumin, n = 76), Npy -Cre/Ai9 (neuropeptide Y, n = 2), Vipr2 -Cre/Ai9 (vasoactive intestinal peptide receptor 2, n = 7), Scl17a8 -Cre/Ai9 (VGLUT3, vesic...",
  "study_system": "mouse M1",
  "evidence_refs": [
    {
      "ref": "paper:paper-be132b319290"
    }
  ],
  "section_title": "Computational Models of VIP Circuit Function",
  "source_policy": {
    "mode": "public_source_pointer_with_short_context",
    "notes": [
      "Local review repositories are read-only inputs.",
      "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
    ],
    "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
    "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
  },
  "evidence_summary": "Phenotypic variation of transcriptomic cell types in mouse motor cortex",
  "review_bundle_ref": "analysis_bundle:ab-2ce40c33e827",
  "replication_status": "replication_unknown",
  "review_package_ref": "analysis_bundle:ab-2ce40c33e827",
  "source_artifact_ref": "wiki_page:computationalreviewvip-12-computational-models",
  "origin_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_12_evidence_package.json",
  "commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "created_by": "persona-jerome-lecoq-gbo-neuroscience",
  "repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}