Version history

{
  "scope": "mouse primary visual cortex (VISp) Patch-seq",
  "claim_text": "In the Allen Institute Patch-seq atlas (mouse VISp), the Vip transcriptomic subclass divides morphologically into bipolar, bitufted, and multipolar cells, with layer-specific axon innervation defining the principal axis of MET-type identity.",
  "raw_fields": {
    "n": 517,
    "doi": "10.1016/j.cell.2020.09.057",
    "claim": "In the Allen Institute Patch-seq atlas (mouse VISp), the Vip transcriptomic subclass divides morphologically into bipolar, bitufted, and multipolar cells, with layer-specific axon innervation defining the principal axis of MET-type identity.",
    "title": null,
    "cite_key": "Gouwens2020a",
    "evidence": "Patch-seq with full local biocytin morphology reconstruction in 517 mouse VISp interneurons; integration of t/e/m modalities into 28 met-types.",
    "effect_size": "3 morphological VIP subclasses (bipolar, bitufted, multipolar)",
    "text_access": "fulltext",
    "study_system": "mouse primary visual cortex (VISp) Patch-seq",
    "_source_cluster": "cluster_03_morphology",
    "replication_status": "replicated",
    "_source_cluster_index": 5,
    "claim_source_sentence": "For example, the Pvalb subclass can be split into basket (and related) cells and chandelier cells; the Sst subclass into Martinotti cells and non-Martinotti cells; the Vip subclass into bipolar, bitufted and multipolar cells; and the Htr3a+/Vip- subclass into neurogliaform cells and single bouquet cells.",
    "replication_evidence_dois": [
      "10.1101/2020.02.03.932244",
      "10.1126/science.adf6484"
    ],
    "effect_size_source_sentence": null
  },
  "section_id": "section_04",
  "source_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_04_evidence_package.json",
  "effect_size": "3 morphological VIP subclasses (bipolar, bitufted, multipolar)",
  "review_repo": "ComputationalReviewVIP",
  "section_ref": "wiki_page:computationalreviewvip-04-morphology",
  "source_kind": "review_finding",
  "source_path": "evidence/section_04_evidence_package.json",
  "source_refs": [
    "paper:paper-pm-33186530"
  ],
  "source_span": "For example, the Pvalb subclass can be split into basket (and related) cells and chandelier cells; the Sst subclass into Martinotti cells and non-Martinotti cells; the Vip subclass into bipolar, bitufted and multipolar cells; and the Htr3a+/Vip- subclass into neurogliaform cells and single bouquet cells.",
  "study_system": "mouse primary visual cortex (VISp) Patch-seq",
  "evidence_refs": [
    {
      "ref": "paper:paper-pm-33186530"
    }
  ],
  "section_title": "Morphological Diversity",
  "source_policy": {
    "mode": "public_source_pointer_with_short_context",
    "notes": [
      "Local review repositories are read-only inputs.",
      "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
    ],
    "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
    "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
  },
  "evidence_summary": "Patch-seq with full local biocytin morphology reconstruction in 517 mouse VISp interneurons; integration of t/e/m modalities into 28 met-types.",
  "review_bundle_ref": "analysis_bundle:ab-2ce40c33e827",
  "replication_status": "replicated",
  "review_package_ref": "analysis_bundle:ab-2ce40c33e827",
  "source_artifact_ref": "wiki_page:computationalreviewvip-04-morphology",
  "origin_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_04_evidence_package.json",
  "commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "created_by": "persona-jerome-lecoq-gbo-neuroscience",
  "repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}