Details

scope
mouse primary visual cortex (VISp) Patch-seq
section_id
section_04
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_04_evidence_package.json
effect_size
3 morphological VIP subclasses (bipolar, bitufted, multipolar)
review_repo
ComputationalReviewVIP
section_ref
wiki_page:computationalreviewvip-04-morphology
source_kind
review_finding
source_path
evidence/section_04_evidence_package.json
study_system
mouse primary visual cortex (VISp) Patch-seq
section_title
Morphological Diversity
evidence_summary
Patch-seq with full local biocytin morphology reconstruction in 517 mouse VISp interneurons; integration of t/e/m modalities into 28 met-types.
review_bundle_ref
analysis_bundle:ab-2ce40c33e827
replication_status
replicated
review_package_ref
analysis_bundle:ab-2ce40c33e827
source_artifact_ref
wiki_page:computationalreviewvip-04-morphology
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_04_evidence_package.json
commit_sha
95e761177f7d2ec565983d3307c14ec238f9677c
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP
Raw fields (6)
claim_text
In the Allen Institute Patch-seq atlas (mouse VISp), the Vip transcriptomic subclass divides morphologically into bipolar, bitufted, and multipolar cells, with layer-specific axon innervation defining the principal axis of MET-type identity.
raw_fields
{
  "n": 517,
  "doi": "10.1016/j.cell.2020.09.057",
  "claim": "In the Allen Institute Patch-seq atlas (mouse VISp), the Vip transcriptomic subclass divides morphologically into bipolar, bitufted, and multipolar cells, with layer-specific axon innervation defining the principal axis of MET-type identity.",
  "title": null,
  "cite_key": "Gouwens2020a",
  "evidence": "Patch-seq with full local biocytin morphology reconstruction in 517 mouse VISp interneurons; integration of t/e/m modalities into 28 met-types.",
  "effect_size": "3 morphological VIP subclasses (bipolar, bitufted, multipolar)",
  "text_access": "fulltext",
  "study_system": "mouse primary visual cortex (VISp) Patch-seq",
  "_source_cluster": "cluster_03_morphology",
  "replication_status": "replicated",
  "_source_cluster_index": 5,
  "claim_source_sentence": "For example, the Pvalb subclass can be split into basket (and related) cells and chandelier cells; the Sst subclass into Martinotti cells and non-Martinotti cells; the Vip subclass into bipolar, bitufted and multipolar cells; and the Htr3a+/Vip- subclass into neurogliaform cells and single bouquet cells.",
  "replication_evidence_dois": [
    "10.1101/2020.02.03.932244",
    "10.1126/science.adf6484"
  ],
  "effect_size_source_sentence": null
}
source_refs
[
  "paper:paper-pm-33186530"
]
source_span
For example, the Pvalb subclass can be split into basket (and related) cells and chandelier cells; the Sst subclass into Martinotti cells and non-Martinotti cells; the Vip subclass into bipolar, bitufted and multipolar cells; and the Htr3a+/Vip- subclass into neurogliaform cells and single bouquet cells.
evidence_refs
[
  {
    "ref": "paper:paper-pm-33186530"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}

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