Version history

{
  "scope": "mouse MOp; integrated scRNA-seq + snRNA-seq + snmC-seq + snATAC-seq",
  "claim_text": "Yao et al. (2021) (BICCN epigenomic atlas) integrated seven scRNA-seq and snRNA-seq datasets of mouse primary motor cortex (MOp) to establish a consensus transcriptomic reference atlas of 116 cell types, including replicable Vip subclasses across datasets and methods.",
  "raw_fields": {
    "n": 500000,
    "doi": "10.1038/s41586-021-03500-8",
    "claim": "Yao et al. (2021) (BICCN epigenomic atlas) integrated seven scRNA-seq and snRNA-seq datasets of mouse primary motor cortex (MOp) to establish a consensus transcriptomic reference atlas of 116 cell types, including replicable Vip subclasses across datasets and methods.",
    "title": null,
    "cite_key": "Yao2021b",
    "evidence": "Joint clustering of 7 scRNA-seq/snRNA-seq datasets + epigenomic data on >500,000 mouse MOp cells; >56 replicable neuronal types including Vip subclasses; provides epigenomic regulatory elements concordant with transcriptomic VIP types.",
    "effect_size": null,
    "text_access": "fulltext",
    "study_system": "mouse MOp; integrated scRNA-seq + snRNA-seq + snmC-seq + snATAC-seq",
    "target_section": "section_02",
    "_source_cluster": "cluster_01_molecular_taxonomy",
    "replication_status": "replicated",
    "_source_cluster_index": 36,
    "claim_source_sentence": "Computational data integration jointly cluster and identify 116 cell types using all the datasets... resulting reference atlas — containing over 56 neuronal cell types that are highly replicable across analysis methods, sequencing technologies and modalities — is a comprehensive molecular and genomic account."
  },
  "section_id": "section_02",
  "source_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_02_evidence_package.json",
  "effect_size": null,
  "review_repo": "ComputationalReviewVIP",
  "section_ref": "wiki_page:computationalreviewvip-02-classification",
  "source_kind": "review_finding",
  "source_path": "evidence/section_02_evidence_package.json",
  "source_refs": [
    "paper:paper-0c694a60c289"
  ],
  "source_span": "Computational data integration jointly cluster and identify 116 cell types using all the datasets... resulting reference atlas — containing over 56 neuronal cell types that are highly replicable across analysis methods, sequencing technologies and modalities — is a comprehensive molecular and genomic account.",
  "study_system": "mouse MOp; integrated scRNA-seq + snRNA-seq + snmC-seq + snATAC-seq",
  "evidence_refs": [
    {
      "ref": "paper:paper-0c694a60c289"
    }
  ],
  "section_title": "Molecular Identity and Transcriptomic Taxonomy",
  "source_policy": {
    "mode": "public_source_pointer_with_short_context",
    "notes": [
      "Local review repositories are read-only inputs.",
      "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
    ],
    "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
    "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
  },
  "evidence_summary": "Joint clustering of 7 scRNA-seq/snRNA-seq datasets + epigenomic data on >500,000 mouse MOp cells; >56 replicable neuronal types including Vip subclasses; provides epigenomic regulatory elements concordant with transcriptomic VIP types.",
  "review_bundle_ref": "analysis_bundle:ab-2ce40c33e827",
  "replication_status": "replicated",
  "review_package_ref": "analysis_bundle:ab-2ce40c33e827",
  "source_artifact_ref": "wiki_page:computationalreviewvip-02-classification",
  "origin_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_02_evidence_package.json",
  "commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "created_by": "persona-jerome-lecoq-gbo-neuroscience",
  "repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}