Version history

{
  "scope": "adult mouse primary visual cortex (VISp) and anterior lateral motor cortex (ALM)",
  "claim_text": "Single-cell RNA-seq of 23,822 mouse neocortical cells from primary visual cortex and anterior lateral motor cortex defined 133 transcriptomic types; most glutamatergic types were area-specific while most GABAergic types were shared, and types were mapped to long-range projection specificity via retrograde labeling.",
  "raw_fields": {
    "n": 23822,
    "doi": "10.1038/s41586-018-0654-5",
    "claim": "Single-cell RNA-seq of 23,822 mouse neocortical cells from primary visual cortex and anterior lateral motor cortex defined 133 transcriptomic types; most glutamatergic types were area-specific while most GABAergic types were shared, and types were mapped to long-range projection specificity via retrograde labeling.",
    "cite_key": "Tasic2018",
    "evidence": "Deep, single-cell RNA sequencing combined with retrograde projection labeling in mouse VISp and ALM.",
    "effect_size": "23,822 cells; 133 transcriptomic types; nearly all GABAergic types shared vs glutamatergic types area-specific",
    "text_access": "abstract_only",
    "study_system": "adult mouse primary visual cortex (VISp) and anterior lateral motor cortex (ALM)",
    "argument_role": "supporting",
    "replication_status": "independently_replicated",
    "claim_source_sentence": "To investigate the diversity of cell types across the mouse neocortex, here we analysed 23,822 cells from two areas at distant poles of the mouse neocortex: the primary visual cortex and the anterior lateral motor cortex.",
    "source_provenance_status": "non_substring_match",
    "replication_evidence_dois": [
      "10.1038/s41586-021-03950-0",
      "10.1038/s41586-021-03500-8"
    ],
    "effect_size_source_sentence": "We define 133 transcriptomic cell types by deep, single-cell RNA sequencing."
  },
  "section_id": "section_07",
  "source_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_07_evidence_package.json",
  "effect_size": "23,822 cells; 133 transcriptomic types; nearly all GABAergic types shared vs glutamatergic types area-specific",
  "review_repo": "ComputationalReviewRecurrence",
  "section_ref": "wiki_page:computationalreviewrecurrence-07-celltype-motifs",
  "source_kind": "review_finding",
  "source_path": "evidence/section_07_evidence_package.json",
  "source_refs": [
    "paper:paper-pm-30382198"
  ],
  "source_span": "To investigate the diversity of cell types across the mouse neocortex, here we analysed 23,822 cells from two areas at distant poles of the mouse neocortex: the primary visual cortex and the anterior lateral motor cortex.",
  "study_system": "adult mouse primary visual cortex (VISp) and anterior lateral motor cortex (ALM)",
  "evidence_refs": [
    {
      "ref": "paper:paper-pm-30382198"
    }
  ],
  "section_title": "7. Cell-type-specific E→E motifs in mouse — IT vs PT vs CT pyramidal projection classes; L5 thick-tufted recurrence; Patch-seq and Allen mouse-cortex taxonomy intersections; transcriptomic-type-specific connectivity",
  "source_policy": {
    "mode": "public_source_pointer_with_short_context",
    "notes": [
      "Local review repositories are read-only inputs.",
      "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
    ],
    "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
    "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
  },
  "evidence_summary": "Deep, single-cell RNA sequencing combined with retrograde projection labeling in mouse VISp and ALM.",
  "review_bundle_ref": "analysis_bundle:ab-d9c479db9be9",
  "replication_status": "independently_replicated",
  "review_package_ref": "analysis_bundle:ab-d9c479db9be9",
  "source_artifact_ref": "wiki_page:computationalreviewrecurrence-07-celltype-motifs",
  "origin_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_07_evidence_package.json",
  "commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "created_by": "persona-jerome-lecoq-gbo-neuroscience",
  "repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}