Version history

{
  "scope": "Mouse/rat/human cortex or hippocampus, see paper",
  "claim_text": "Cellular anatomy of the human cortex resolved by single-nucleus transcriptomics identifies multiple VIP/LAMP5/SNCG interneuron subtypes; connectivity inferred via shared molecular markers.",
  "raw_fields": {
    "n": null,
    "doi": "10.1038/s41586-021-03969-3",
    "claim": "Cellular anatomy of the human cortex resolved by single-nucleus transcriptomics identifies multiple VIP/LAMP5/SNCG interneuron subtypes; connectivity inferred via shared molecular markers.",
    "title": null,
    "cite_key": "Booeshaghi2021",
    "evidence": "Here, in a comprehensive analysis of 6,160 mouse primary motor cortex cells assayed with SMART-seq, 280,327 cells assayed with MERFISH<sup>2</sup> and 94,162 cells assayed with 10x Genomics sequencing<sup>3</sup>, we find examples of isoform specificity in cell types-including isoform shifts between cell types that are masked in gene-level analysis-as well as examples of transcriptional regulation.",
    "effect_size": null,
    "text_access": "abstract_only",
    "study_system": "Mouse/rat/human cortex or hippocampus, see paper",
    "_source_cluster": "cluster_05_synaptic_connectivity",
    "replication_status": "replication_unknown",
    "_source_cluster_index": 279,
    "claim_source_sentence": "Here, in a comprehensive analysis of 6,160 mouse primary motor cortex cells assayed with SMART-seq, 280,327 cells assayed with MERFISH<sup>2</sup> and 94,162 cells assayed with 10x Genomics sequencing<sup>3</sup>, we find examples of isoform specificity in cell types-including isoform shifts between cell types that are masked in gene-level analysis-as well as examples of transcriptional regulation.",
    "replication_evidence_dois": [],
    "effect_size_source_sentence": null
  },
  "section_id": "section_06",
  "source_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_06_evidence_package.json",
  "effect_size": null,
  "review_repo": "ComputationalReviewVIP",
  "section_ref": "wiki_page:computationalreviewvip-06-synaptic-properties",
  "source_kind": "review_finding",
  "source_path": "evidence/section_06_evidence_package.json",
  "source_refs": [
    "paper:paper-9443e876ca93"
  ],
  "source_span": "Here, in a comprehensive analysis of 6,160 mouse primary motor cortex cells assayed with SMART-seq, 280,327 cells assayed with MERFISH<sup>2</sup> and 94,162 cells assayed with 10x Genomics sequencing<sup>3</sup>, we find examples of isoform specificity in cell types-including isoform shifts between cell types that are masked in gene-level analysis-as well as examples of transcriptional regulation.",
  "study_system": "Mouse/rat/human cortex or hippocampus, see paper",
  "evidence_refs": [
    {
      "ref": "paper:paper-9443e876ca93"
    }
  ],
  "section_title": "Synaptic Properties and Connectivity",
  "source_policy": {
    "mode": "public_source_pointer_with_short_context",
    "notes": [
      "Local review repositories are read-only inputs.",
      "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
    ],
    "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
    "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
  },
  "evidence_summary": "Here, in a comprehensive analysis of 6,160 mouse primary motor cortex cells assayed with SMART-seq, 280,327 cells assayed with MERFISH<sup>2</sup> and 94,162 cells assayed with 10x Genomics sequencing<sup>3</sup>, we find examples of isoform specificity in cell types-including isoform shifts between cell types that are masked in gene-level analysis-as well as examples of transcriptional regulation.",
  "review_bundle_ref": "analysis_bundle:ab-2ce40c33e827",
  "replication_status": "replication_unknown",
  "review_package_ref": "analysis_bundle:ab-2ce40c33e827",
  "source_artifact_ref": "wiki_page:computationalreviewvip-06-synaptic-properties",
  "origin_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_06_evidence_package.json",
  "commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "created_by": "persona-jerome-lecoq-gbo-neuroscience",
  "repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}