Version history

{
  "scope": "mouse whole-brain connectivity (Allen Atlas)",
  "claim_text": "The Allen Mouse Brain Connectivity Atlas provides a brain-wide cellular-level connectome including a cortico-thalamic pathway analysis demonstrating segregation and integration of parallel thalamocortical pathways.",
  "raw_fields": {
    "n": 0,
    "doi": "10.1038/nature13186",
    "claim": "The Allen Mouse Brain Connectivity Atlas provides a brain-wide cellular-level connectome including a cortico-thalamic pathway analysis demonstrating segregation and integration of parallel thalamocortical pathways.",
    "cite_key": "Oh2014",
    "evidence": "Mesoscale tract-tracing connectome enabling system-level analysis of mouse cortico-thalamic loops.",
    "effect_size": "High x – y resolution (0.35 μm) 2D images in the coronal pla",
    "text_access": "fulltext",
    "study_system": "mouse whole-brain connectivity (Allen Atlas)",
    "source_cluster_id": "cluster_05",
    "replication_status": "independently_replicated",
    "claim_source_sentence": "As an example, 7 representative isocortical injections ( Fig. 2 ) reveal distinct projection patterns in the striatum, thalamus, zona incerta, midbrain, pons and medulla.",
    "replication_evidence_dois": [
      "10.1038/s41586-019-1716-z",
      "10.1038/nn.4197"
    ],
    "effect_size_source_sentence": "High x – y resolution (0.35 μm) 2D images in the coronal plane were obtained at a z -sampling interval of 100-μm across the entire brain during a continuous 18.5 h scanning period, resulting in 140 serial sections (a ~750 gigabyte (GB) data set) for each brain ( Extended Data Fig. 2a and Supplementary Video 1 )."
  },
  "section_id": "section_06",
  "source_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewLoops/blob/0632aae8abc141909207fe91f6349b9e36489c3b/evidence/section_06_evidence_package.json",
  "effect_size": "High x – y resolution (0.35 μm) 2D images in the coronal pla",
  "review_repo": "ComputationalReviewLoops",
  "section_ref": "wiki_page:computationalreviewloops-06",
  "source_kind": "review_finding",
  "source_path": "evidence/section_06_evidence_package.json",
  "source_refs": [
    "paper:paper-bb5df5f7b66e"
  ],
  "source_span": "As an example, 7 representative isocortical injections ( Fig. 2 ) reveal distinct projection patterns in the striatum, thalamus, zona incerta, midbrain, pons and medulla.",
  "study_system": "mouse whole-brain connectivity (Allen Atlas)",
  "evidence_refs": [
    {
      "ref": "paper:paper-bb5df5f7b66e"
    }
  ],
  "section_title": "Thalamic Feedback: Closing the Loop",
  "source_policy": {
    "mode": "public_source_pointer_with_short_context",
    "notes": [
      "Local review repositories are read-only inputs.",
      "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
    ],
    "source_commit_sha": "0632aae8abc141909207fe91f6349b9e36489c3b",
    "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewLoops"
  },
  "evidence_summary": "Mesoscale tract-tracing connectome enabling system-level analysis of mouse cortico-thalamic loops.",
  "review_bundle_ref": "analysis_bundle:ab-d49e54403ef9",
  "replication_status": "independently_replicated",
  "review_package_ref": "analysis_bundle:ab-d49e54403ef9",
  "source_artifact_ref": "wiki_page:computationalreviewloops-06",
  "origin_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewLoops/blob/0632aae8abc141909207fe91f6349b9e36489c3b/evidence/section_06_evidence_package.json",
  "commit_sha": "0632aae8abc141909207fe91f6349b9e36489c3b",
  "created_by": "persona-jerome-lecoq-gbo-neuroscience",
  "repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewLoops"
}