Details

scope
mouse whole-brain connectivity (Allen Atlas)
claim_text
The Allen Mouse Brain Connectivity Atlas provides a brain-wide cellular-level connectome including a cortico-thalamic pathway analysis demonstrating segregation and integration of parallel thalamocortical pathways.
section_id
section_06
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewLoops/blob/0632aae8abc141909207fe91f6349b9e36489c3b/evidence/section_06_evidence_package.json
effect_size
High x – y resolution (0.35 μm) 2D images in the coronal pla
review_repo
ComputationalReviewLoops
section_ref
wiki_page:computationalreviewloops-06
source_kind
review_finding
source_path
evidence/section_06_evidence_package.json
source_span
As an example, 7 representative isocortical injections ( Fig. 2 ) reveal distinct projection patterns in the striatum, thalamus, zona incerta, midbrain, pons and medulla.
study_system
mouse whole-brain connectivity (Allen Atlas)
section_title
Thalamic Feedback: Closing the Loop
evidence_summary
Mesoscale tract-tracing connectome enabling system-level analysis of mouse cortico-thalamic loops.
review_bundle_ref
analysis_bundle:ab-d49e54403ef9
replication_status
independently_replicated
review_package_ref
analysis_bundle:ab-d49e54403ef9
source_artifact_ref
wiki_page:computationalreviewloops-06
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewLoops/blob/0632aae8abc141909207fe91f6349b9e36489c3b/evidence/section_06_evidence_package.json
commit_sha
0632aae8abc141909207fe91f6349b9e36489c3b
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewLoops
Raw fields (4)
raw_fields
{
  "n": 0,
  "doi": "10.1038/nature13186",
  "claim": "The Allen Mouse Brain Connectivity Atlas provides a brain-wide cellular-level connectome including a cortico-thalamic pathway analysis demonstrating segregation and integration of parallel thalamocortical pathways.",
  "cite_key": "Oh2014",
  "evidence": "Mesoscale tract-tracing connectome enabling system-level analysis of mouse cortico-thalamic loops.",
  "effect_size": "High x – y resolution (0.35 μm) 2D images in the coronal pla",
  "text_access": "fulltext",
  "study_system": "mouse whole-brain connectivity (Allen Atlas)",
  "source_cluster_id": "cluster_05",
  "replication_status": "independently_replicated",
  "claim_source_sentence": "As an example, 7 representative isocortical injections ( Fig. 2 ) reveal distinct projection patterns in the striatum, thalamus, zona incerta, midbrain, pons and medulla.",
  "replication_evidence_dois": [
    "10.1038/s41586-019-1716-z",
    "10.1038/nn.4197"
  ],
  "effect_size_source_sentence": "High x – y resolution (0.35 μm) 2D images in the coronal plane were obtained at a z -sampling interval of 100-μm across the entire brain during a continuous 18.5 h scanning period, resulting in 140 serial sections (a ~750 gigabyte (GB) data set) for each brain ( Extended Data Fig. 2a and Supplementary Video 1 )."
}
source_refs
[
  "paper:paper-bb5df5f7b66e"
]
evidence_refs
[
  {
    "ref": "paper:paper-bb5df5f7b66e"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "0632aae8abc141909207fe91f6349b9e36489c3b",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewLoops"
}

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