Details

scope
mouse; V1, visual cortex; optogenetics; The Journal of physiology
claim_text
Optogenetic tools have been used to investigate neural circuits in mouse primary visual cortex (V1), where channelrhodopsin-mediated activation (photostimulation) of inhibitory interneuron subtypes e…
section_id
section_09
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_09_evidence_package.json
review_repo
ComputationalReviewRecurrence
section_ref
wiki_page:computationalreviewrecurrence-09-amplification-isn
source_kind
review_finding
source_path
evidence/section_09_evidence_package.json
study_system
mouse; V1, visual cortex; optogenetics; The Journal of physiology
section_title
9. Physiological signature I — recurrent amplification of weak inputs in mouse cortex; balanced-amplification regimes; ISN operation
review_bundle_ref
analysis_bundle:ab-d9c479db9be9
replication_status
single_study
review_package_ref
analysis_bundle:ab-d9c479db9be9
source_artifact_ref
wiki_page:computationalreviewrecurrence-09-amplification-isn
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_09_evidence_package.json
commit_sha
79ce062d54a924ce05953ec90aa9d26044d2b48f
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence
Raw fields (7)
raw_fields
{
  "n": null,
  "doi": "10.1113/jp287265",
  "claim": "Optogenetic tools have been used to investigate neural circuits in mouse primary visual cortex (V1), where channelrhodopsin-mediated activation (photostimulation) of inhibitory interneuron subtypes e…",
  "cite_key": "Shapiro2025",
  "evidence": "Optogenetic tools have been used to investigate neural circuits in mouse primary visual cortex (V1), where channelrhodopsin-mediated activation (photostimulation) of inhibitory interneuron subtypes expressing parvalbumin (Pvalb+), somatostatin (SOM+) or vasoactive intestinal peptide (VIP+) can alter the responses of excitatory pyramidal neurons. Some studies have mentioned rebound spiking after this photostimulation, but no systematic analysis of these post-inhibitory rebound effects has yet bee...",
  "effect_size": "Pyr cells (black triangles) use excitatory glutamatergic chemical synapses (Excite) to activate interneurons with feedforward (FF) or feedback (FB) connections., spike density function (SDF) and raster plot showing a Pvalb+ interneuron's response to a drifting 100% contrast sine wave grating without (black line) or with optogenetic activation (red line).",
  "text_access": "fulltext",
  "study_system": "mouse; V1, visual cortex; optogenetics; The Journal of physiology",
  "argument_role": "supporting",
  "replication_status": "single_study",
  "claim_source_sentence": "Optogenetic tools have been used to investigate neural circuits in mouse primary visual cortex (V1), where channelrhodopsin-mediated activation (photostimulation) of inhibitory interneuron subtypes expressing parvalbumin (Pvalb+), somatostatin (SOM+) or vasoactive intestinal peptide (VIP+) can alter the responses of excitatory pyramidal neurons.",
  "source_provenance_status": "ok",
  "replication_evidence_dois": [],
  "claim_rewritten_from_source": true,
  "effect_size_source_sentence": "Pyr cells (black triangles) use excitatory glutamatergic chemical synapses (Excite) to activate interneurons with feedforward (FF) or feedback (FB) connections., spike density function (SDF) and raster plot showing a Pvalb+ interneuron's response to a drifting 100% contrast sine wave grating without (black line) or with optogenetic activation (red line)."
}
effect_size
Pyr cells (black triangles) use excitatory glutamatergic chemical synapses (Excite) to activate interneurons with feedforward (FF) or feedback (FB) connections., spike density function (SDF) and raster plot showing a Pvalb+ interneuron's response to a drifting 100% contrast sine wave grating without (black line) or with optogenetic activation (red line).
source_refs
[
  "paper:paper-410b852f3cc3"
]
source_span
Optogenetic tools have been used to investigate neural circuits in mouse primary visual cortex (V1), where channelrhodopsin-mediated activation (photostimulation) of inhibitory interneuron subtypes expressing parvalbumin (Pvalb+), somatostatin (SOM+) or vasoactive intestinal peptide (VIP+) can alter the responses of excitatory pyramidal neurons.
evidence_refs
[
  {
    "ref": "paper:paper-410b852f3cc3"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}
evidence_summary
Optogenetic tools have been used to investigate neural circuits in mouse primary visual cortex (V1), where channelrhodopsin-mediated activation (photostimulation) of inhibitory interneuron subtypes expressing parvalbumin (Pvalb+), somatostatin (SOM+) or vasoactive intestinal peptide (VIP+) can alter the responses of excitatory pyramidal neurons. Some studies have mentioned rebound spiking after this photostimulation, but no systematic analysis of these post-inhibitory rebound effects has yet bee...

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