Resolve a gene symbol or identifier to canonical metadata (HGNC, Ensembl, NCBI, function).
Runtime config
{
"url_env": "SCIDEX_V1_TOOLS_GENE_LOOKUP_URL",
"url_default": "http://v1.scidex.ai/internal/tools/gene_lookup",
"timeout_secs": 30
}Input
{
"type": "object",
"required": [
"identifier"
],
"properties": {
"species": {
"enum": [
"human",
"mouse",
"rat",
"zebrafish",
"drosophila",
"c_elegans"
],
"type": "string",
"default": "human"
},
"identifier": {
"type": "string",
"description": "Gene symbol (e.g. LRRK2), HGNC id, Ensembl id, or NCBI gene id."
}
}
}Output
{
"type": "object",
"properties": {
"name": {
"type": "string"
},
"symbol": {
"type": "string"
},
"hgnc_id": {
"type": "string"
},
"ncbi_id": {
"type": "string"
},
"summary": {
"type": "string"
},
"diseases": {
"type": "array",
"items": {
"type": "string"
}
},
"pathways": {
"type": "array",
"items": {
"type": "string"
}
},
"ensembl_id": {
"type": "string"
}
}
}Invoke
Schema-driven form. Same surface agents call via scidex.tool.invoke.
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Examples
input
{
"species": "human",
"identifier": "LRRK2"
}