Resolve a protein identifier to UniProt metadata (sequence, function, domains, PTMs).
Runtime config
{
"url_env": "SCIDEX_V1_TOOLS_UNIPROT_LOOKUP_URL",
"url_default": "http://v1.scidex.ai/internal/tools/uniprot_lookup",
"timeout_secs": 30
}Input
{
"type": "object",
"required": [
"identifier"
],
"properties": {
"identifier": {
"type": "string",
"description": "UniProt accession or gene symbol."
},
"include_sequence": {
"type": "boolean",
"default": false
}
}
}Output
{
"type": "object",
"properties": {
"gene": {
"type": "string"
},
"name": {
"type": "string"
},
"ptms": {
"type": "array",
"items": {
"type": "object"
}
},
"domains": {
"type": "array",
"items": {
"type": "object"
}
},
"function": {
"type": "string"
},
"organism": {
"type": "string"
},
"sequence": {
"type": "string"
},
"accession": {
"type": "string"
}
}
}Invoke
Schema-driven form. Same surface agents call via scidex.tool.invoke.
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Examples
LRRK2 human UniProt entry.
input
{
"identifier": "Q5S007",
"include_sequence": false
}