Details

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infographic
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3. Paired-recording evidence in mouse — connection probabilities and synaptic strengths between pyramidal cells within a column, layer-by-layer (Lefort, Petersen, Adesnik, Feldmeyer, Markram-style work in mouse) figure 2
provider
other
section_id
section_03
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_03_evidence_package.json
target_ref
wiki_page:computationalreviewrecurrence-03-paired-recording
review_repo
ComputationalReviewRecurrence
section_ref
wiki_page:computationalreviewrecurrence-03-paired-recording
source_path
evidence/section_03_evidence_package.json
section_title
3. Paired-recording evidence in mouse — connection probabilities and synaptic strengths between pyramidal cells within a column, layer-by-layer (Lefort, Petersen, Adesnik, Feldmeyer, Markram-style work in mouse)
generation_status
complete
review_bundle_ref
analysis_bundle:ab-d9c479db9be9
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_03_evidence_package.json
commit_sha
79ce062d54a924ce05953ec90aa9d26044d2b48f
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence
Raw fields (3)
raw_fields
{
  "id": "unitary_EPSP_distribution_mouse_cortex",
  "type": "unitary EPSP amplitude distribution",
  "description": "Distributions of unitary EPSP amplitudes between mouse cortical pyramidal pairs across studies (log-normal/heavy-tailed signature; rare strong, many weak).",
  "audit_issues": [
    {
      "dimension": "metric_definition",
      "description": "Sources report different statistics of uEPSP distributions: per-layer-pair amplitudes (Lefort 2009), in vivo L2 CV ≈ 0.74 with median <0.5 mV (Jouhanneau 2015), 'distributions' (Seeman 2018 — DOI mismatch), 'log-normal efficacy across cell types' (Optomapping, missing DOI), and L2/3 mouse-S1 unitary amplitudes (Avermann 2012). They do not all yield a comparable scalar.",
      "entries_affected": [
        "10.1038/nature14182",
        "10.1016/j.neuron.2008.12.020",
        "10.1016/j.celrep.2015.11.011",
        "10.7554/elife.26839",
        "10.1152/jn.00917.2011",
        ""
      ]
    },
    {
      "dimension": "scope_region",
      "description": "Lefort/Avermann use S1, others V1; the comparison mixes sensory areas without uniform layer-pair scope.",
      "entries_affected": [
        "10.1038/nature14182",
        "10.1016/j.neuron.2008.12.020",
        "10.1016/j.celrep.2015.11.011",
        "10.7554/elife.26839",
        "10.1152/jn.00917.2011"
      ]
    }
  ],
  "audit_verdict": "SPLIT",
  "section_targets": [
    "section_03"
  ],
  "comparable_sources": [
    {
      "doi": "10.1016/j.neuron.2008.12.020",
      "pmid": "19186171",
      "what": "Lefort 2009 — uEPSP by layer pair"
    },
    {
      "doi": "10.1016/j.celrep.2015.11.011",
      "pmid": "26670044",
      "what": "Jouhanneau 2015 — in vivo L2 uEPSP (CV ≈ 0.74, most <0.5 mV)"
    },
    {
      "doi": "10.7554/elife.26839",
      "pmid": "30256194",
      "what": "Seeman 2018 — multipatch V1 uEPSP distributions"
    },
    {
      "doi": "",
      "pmid": "39872485",
      "what": "Optomapping V1 — log-normal efficacy across cell types"
    },
    {
      "doi": "10.1152/jn.00917.2011",
      "pmid": "22402650",
      "what": "Avermann 2012 — L2/3 mouse S1 unitary amplitudes"
    }
  ],
  "primary_source_doi": "10.1038/nature14182",
  "primary_source_pmid": "25652823",
  "notes_for_extraction": "Extract uEPSP amplitude histograms (and fit parameters) from Cossell 2015 V1, Lefort 2009 S1 by-layer, Jouhanneau 2015 in vivo L2, Seeman 2018 multipatch V1, optomapping (PMID 39872485). Plot on log axis to assess log-normal consistency vs deviations.",
  "claim_source_sentence": "Excitatory connection amplitudes between pairs of cortical neurons vary over two orders of magnitude, comprising only very few strong connections among many weaker ones.",
  "audit_fabrication_flag": "Label 'Seeman 2018' on DOI 10.7554/elife.26839 does not match DOI authors (Kondo et al. 2017). One entry ('Optomapping V1') has no DOI.",
  "mandatory_caption_caveats": [
    "uEPSP distributions are reported with different statistics (CV, median, mean, log-normal-fit parameters) across studies — values cannot be plotted on a common amplitude axis without re-extraction from the source data.",
    "Mixed cortical areas (mouse V1 vs. S1 barrel column).",
    "Verify the 'Seeman 2018' source identifier (DOI 10.7554/elife.26839 maps to Kondo et al. 2017).",
    "Phase 7 writer: SPLIT verdict — implement as: Restrict to studies that report at least the median and IQR of unitary EPSP amplitudes in a single, defined layer-pair (e.g., L2/3→L2/3 in V1). Drop entries without a DOI."
  ]
}
source_refs
[]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}

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