Details

kind
infographic
provider
other
section_id
section_05
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_05_evidence_package.json
target_ref
wiki_page:computationalreviewrecurrence-05-horizontal
review_repo
ComputationalReviewRecurrence
section_ref
wiki_page:computationalreviewrecurrence-05-horizontal
source_path
evidence/section_05_evidence_package.json
section_title
5. Horizontal long-range intracortical excitatory connections in mouse — patchy L2/3-L5 axons, similarity tuning, distance-decay
generation_status
complete
review_bundle_ref
analysis_bundle:ab-d9c479db9be9
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_05_evidence_package.json
commit_sha
79ce062d54a924ce05953ec90aa9d26044d2b48f
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence
Raw fields (4)
prompt
Convergent evidence across paired recordings, functional EM of L2/3, and millimetre-scale connectomics that excitatory-to-excitatory wiring in mouse V1 is biased by tuning similarity — most strongly for the few large-amplitude connections — and that the rule extends across layers and visual areas.
raw_fields
{
  "papers": [
    {
      "n": 0,
      "doi": "10.1038/nature09880",
      "value": "~2× higher for same vs orthogonal orientation",
      "method": "paired recordings preceded by in vivo two-photon Ca imaging",
      "metric": "connection probability — same vs orthogonal orientation",
      "n_analyzed": "not reported in abstract",
      "ci_or_error": "qualitative ratio",
      "text_access": "abstract_only",
      "n_definition": "V1 L2/3 pyramidal pairs tested in vitro after in vivo characterization",
      "scope_region": "V1, local L2/3 microcircuit",
      "study_system": "mouse V1 L2/3; in vivo Ca imaging + in vitro paired recordings",
      "taxonomic_level": "cell-class",
      "scope_population": "L2/3 pyramidal neurons",
      "value_source_sentence": "Neurons with the same preference for oriented stimuli connected at twice the rate of neurons with orthogonal orientation preferences.",
      "experimental_conditions": "adult mice with normal visual experience"
    },
    {
      "n": 0,
      "doi": "10.1038/nature14182",
      "value": "~2 orders of magnitude span; strongest connections among most-correlated pairs",
      "method": "paired recordings + in vivo Ca imaging",
      "metric": "distribution of connection strength vs signal correlation",
      "n_analyzed": "not in abstract",
      "ci_or_error": "distribution span",
      "text_access": "abstract_only",
      "n_definition": "L2/3 pyramidal pairs with paired EPSPs",
      "scope_region": "V1, local L2/3 microcircuit",
      "study_system": "mouse V1 L2/3; paired patch + in vivo Ca imaging",
      "taxonomic_level": "cell-class",
      "scope_population": "L2/3 pyramidal neurons",
      "value_source_sentence": "Excitatory connection amplitudes between pairs of cortical neurons vary over two orders of magnitude, comprising only very few strong connections among many weaker ones.",
      "experimental_conditions": "adult mice"
    },
    {
      "n": 0,
      "doi": "10.1038/nature17192",
      "value": "Same-orientation pairs preferentially synapsing despite uniform axon–dendrite proximity",
      "method": "two-photon Ca imaging + serial-section EM",
      "metric": "orientation-similarity selectivity of synapse formation (EM)",
      "n_analyzed": "not reported in abstract",
      "ci_or_error": "qualitative",
      "text_access": "abstract_only",
      "n_definition": "axon–dendrite contacts evaluated in EM volume",
      "scope_region": "V1, local L2/3 microcircuit",
      "study_system": "mouse V1 L2/3; functional-EM (calcium imaging + ssEM)",
      "taxonomic_level": "cell-class",
      "scope_population": "L2/3 pyramidal neurons",
      "value_source_sentence": "More specifically, we found that pyramidal neurons with similar orientation selectivity preferentially formed synapses with each other, despite the fact that axons and dendrites of all orientation selectivities pass near (<5 μm) each other with roughly equal probability.",
      "experimental_conditions": "adult mice"
    },
    {
      "n": 0,
      "doi": "10.1038/s41586-025-08840-3",
      "value": "like-to-like extends across layers/areas including feedback; only feature (not spatial) component predicts connections",
      "method": "millimetre-scale functional connectomics",
      "metric": "feature-similarity dependence of fine-scale connectivity (MICrONS scale)",
      "n_analyzed": "not in abstract",
      "ci_or_error": "qualitative across areas/layers",
      "text_access": "abstract_only",
      "n_definition": "millimetre-scale connectomic dataset (MICrONS)",
      "scope_region": "V1 + higher visual areas",
      "study_system": "mouse visual cortex; large-volume EM + functional imaging",
      "taxonomic_level": "cell-class/layer/area",
      "scope_population": "excitatory neurons across layers",
      "value_source_sentence": "Our results reveal that neurons with similar response properties are preferentially connected within and across layers and areas-including feedback connections-supporting the universality of 'like-to-like' connectivity across the visual hierarchy.",
      "experimental_conditions": "adult mice (MICrONS preparation)"
    }
  ],
  "audit_issues": [
    {
      "dimension": "metric_definition",
      "description": "Rows mix P(conn) trend with ΔOri (Ko 2011, p-value), EPSP-vs-correlation distribution (Cossell 2015), EM synapse preference (Lee 2016), and feature-similarity gradient (MICrONS). All probe like-to-like wiring but yield non-comparable scalar statistics.",
      "entries_affected": [
        "10.1038/nature09880",
        "10.1038/nature14182",
        "10.1038/nature17192",
        "10.1038/s41586-025-08840-3"
      ]
    },
    {
      "dimension": "scope_region",
      "description": "MICrONS spans V1 + multiple higher visual areas across layers; the other three are local V1 L2/3 only.",
      "entries_affected": [
        "10.1038/s41586-025-08840-3",
        "10.1038/nature09880",
        "10.1038/nature14182",
        "10.1038/nature17192"
      ]
    }
  ],
  "audit_verdict": "CAVEAT",
  "comparison_id": "like-to-like-p-connection",
  "comparison_name": "Like-to-like excitatory connectivity by tuning similarity in mouse V1",
  "comparison_type": "convergent evidence",
  "what_it_reveals": "Convergent evidence across paired recordings, functional EM of L2/3, and millimetre-scale connectomics that excitatory-to-excitatory wiring in mouse V1 is biased by tuning similarity — most strongly for the few large-amplitude connections — and that the rule extends across layers and visual areas.",
  "homogeneity_check": {
    "caveats": [
      "Methods span paired recordings, functional EM, and millimetre-scale connectomics; n-definitions therefore differ.",
      "First three entries are confined to local L2/3 V1; MICrONS extends to other layers and inter-areal feedback connections — comparison spans broader scope."
    ],
    "n_definition_uniform": "false",
    "scope_region_uniform": "false",
    "taxonomic_level_uniform": "true",
    "scope_population_uniform": "true"
  },
  "suggested_plot_type": "forest plot",
  "mandatory_caption_caveats": [
    "Like-to-like is measured by different statistics across studies (P(conn) trend, EPSP–correlation distribution, EM synapse preference, feature-similarity gradient); rows are not averageable.",
    "MICrONS covers V1 + higher visual areas, layers 2–6, including feedback; the other rows are local V1 L2/3."
  ]
}
source_refs
[
  "paper:paper-31c9e0b4d258",
  "paper:paper-7ac22819c082",
  "paper:paper-c4ad527c9bfb",
  "paper:paper-d2a8c6775359"
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}

Voting as anonymous. Sign in to attribute your signals.

tokens

Replication

No replications yet

Discussion

Posting anonymously. Sign in for attribution.

No comments yet — be the first.