Details

kind
infographic
prompt
Chandelier cell postsynaptic effects across studies
provider
other
section_id
section_06_evidence
source_url
https://github.com/AllenNeuralDynamics/ComputationReviewInhibitory/blob/934e0675cc6d5ffd9978a4a9883b31166ce000e2/evidence/section_06_evidence.json
target_ref
wiki_page:computationreviewinhibitory-06
review_repo
ComputationReviewInhibitory
section_ref
wiki_page:computationreviewinhibitory-06
source_path
evidence/section_06_evidence.json
section_title
VIP Interneuron Function and Disinhibition
generation_status
complete
review_bundle_ref
analysis_bundle:ab-5fc3c0c0505b
origin_url
https://github.com/AllenNeuralDynamics/ComputationReviewInhibitory/blob/934e0675cc6d5ffd9978a4a9883b31166ce000e2/evidence/section_06_evidence.json
commit_sha
934e0675cc6d5ffd9978a4a9883b31166ce000e2
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationReviewInhibitory
Raw fields (3)
raw_fields
{
  "papers": [
    {
      "n": null,
      "doi": "10.1523/jneurosci.2700-20.2021",
      "value": "22%",
      "cite_key": "Vereczki2021",
      "n_definition": "number of recordings or cell pairs",
      "scope_region": "cortex / hippocampus",
      "scope_population": "chandelier cells → pyramidal neurons",
      "value_source_sentence": "Using unbiased stereology, we found that the ratio of GABAergic neurons in the BA (22%) is significantly higher than in the LA (16%) in both male and female mice."
    },
    {
      "n": null,
      "doi": "10.1093/cercor/7.6.476",
      "value": "28 (from abstract context)",
      "cite_key": "Kawaguchi1997",
      "n_definition": "number of recordings or cell pairs",
      "scope_region": "cortex / hippocampus",
      "scope_population": "chandelier cells → pyramidal neurons",
      "value_source_sentence": "Both these physiological types corresponded to a range of morphologies: (i) somatostatin-containing Martinotti cells with ascending axonal arbors to layer I (some were also positive for calbindin D28k); (ii) VIP-containing double bouquet cells with descending axonal arbors as well as arcade cells (these included small cells immunoreactive for CCK or calretinin)."
    },
    {
      "n": null,
      "doi": "10.1523/jneurosci.0908-08.2008",
      "value": "2006 (from abstract context)",
      "cite_key": "Khirug2008",
      "n_definition": "number of recordings or cell pairs",
      "scope_region": "cortex / hippocampus",
      "scope_population": "chandelier cells → pyramidal neurons",
      "value_source_sentence": "However, recent work (Szabadics et al., 2006) indicates that this input from AACs can be depolarizing and even excitatory."
    },
    {
      "n": null,
      "doi": "10.3389/fnmol.2019.00154",
      "value": "2 (from abstract context)",
      "cite_key": "Contreras2019",
      "n_definition": "number of recordings or cell pairs",
      "scope_region": "cortex / hippocampus",
      "scope_population": "chandelier cells → pyramidal neurons",
      "value_source_sentence": "Unique presynaptic molecular contributors, <i>LGI2</i> and <i>FGF13</i>, expressed in parvalbumin positive basket cells and chandelier cells, respectively, have also recently been identified."
    },
    {
      "n": null,
      "doi": "10.14712/fb2009055060201",
      "value": "25 % of",
      "cite_key": "Druga2009",
      "n_definition": "number of recordings or cell pairs",
      "scope_region": "cortex / hippocampus",
      "scope_population": "chandelier cells → pyramidal neurons",
      "value_source_sentence": "GABAergic, inhibitory interneurons are morphologically distinct from excitatory pyramidal cells and account for 20-25 % of all neocortical neurons."
    },
    {
      "n": null,
      "doi": "10.1523/jneurosci.23-07-02759.2003",
      "value": "25 ms",
      "cite_key": "Sayin2003",
      "n_definition": "number of recordings or cell pairs",
      "scope_region": "cortex / hippocampus",
      "scope_population": "chandelier cells → pyramidal neurons",
      "value_source_sentence": "Previous studies have demonstrated that the initial seizures evoked by kindling increase paired-pulse inhibition at 15-25 msec interpulse intervals in the dentate gyrus and also induce apoptosis, progressive neuronal loss, mossy fiber sprouting, and neurogenesis, which could potentially alter the balance of excitation and/or inhibition and modify functional properties of hippocampal circuits."
    }
  ],
  "x_axis": "Study",
  "y_axis": "Postsynaptic effect (depolarization vs hyperpolarization)",
  "n_analyzed": "varies",
  "n_definition": "number of paired recordings",
  "scope_region": "cortex and hippocampus",
  "comparison_name": "Chandelier cell postsynaptic effects across studies",
  "comparison_type": "cross_study_conflict",
  "taxonomic_level": "chandelier cell class (PV+)",
  "scope_population": "chandelier cells / axo-axonic cells",
  "homogeneity_check": {
    "caveats": [
      "Different recording conditions (whole-cell vs perforated patch)",
      "Different chloride concentrations in internal solutions",
      "Different brain regions and layers",
      "Different developmental ages",
      "Critical dependence on intact chloride gradients - some methods disrupt these"
    ],
    "comparable": false
  }
}
source_refs
[
  "paper:paper-0506337fc9e9",
  "paper:paper-205603bfaf82",
  "paper:paper-2cd62c7ab4ba",
  "paper:paper-3d014890c700",
  "paper:paper-3f63e12bf8c8",
  "paper:paper-5bc62b85e3e7"
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "934e0675cc6d5ffd9978a4a9883b31166ce000e2",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationReviewInhibitory"
}

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