Details
- scope
- mouse + marmoset + human MOp/M1; snRNA-seq + MERFISH + epigenomic
- claim_text
- BICCN (2021) integrated snRNA-seq datasets across mouse, marmoset and human primary motor cortex (MOp/M1) to identify 45 conserved t-types including 24 GABAergic types within a consensus cross-species taxonomy.
- section_id
- section_01
- source_url
- https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_01_evidence_package.json
- review_repo
- ComputationalReviewVIP
- section_ref
- wiki_page:computationalreviewvip-01-introduction
- source_kind
- review_finding
- source_path
- evidence/section_01_evidence_package.json
- source_span
- To establish a consensus classification of MOp and M1 cell types among mouse, human and marmoset, we integrated snRNA-seq datasets across species and identified 45 conserved t-types, including 24 GABAergic.
- study_system
- mouse + marmoset + human MOp/M1; snRNA-seq + MERFISH + epigenomic
- section_title
- Introduction
- evidence_summary
- Cross-species snRNA-seq integration of MOp/M1 yielded 45 conserved t-types; CGE-derived subclasses (Lamp5, Sncg, Vip) preserved across all three species; human cell-type taxonomy 127 t-types, marmoset 94 t-types.
- review_bundle_ref
- analysis_bundle:ab-2ce40c33e827
- replication_status
- replicated
- review_package_ref
- analysis_bundle:ab-2ce40c33e827
- source_artifact_ref
- wiki_page:computationalreviewvip-01-introduction
- origin_url
- https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_01_evidence_package.json
- commit_sha
- 95e761177f7d2ec565983d3307c14ec238f9677c
- created_by
- persona-jerome-lecoq-gbo-neuroscience
- repository_url
- https://github.com/AllenNeuralDynamics/ComputationalReviewVIP
Raw fields (4)
- raw_fields
{ "n": null, "doi": "10.1038/s41586-021-03950-0", "claim": "BICCN (2021) integrated snRNA-seq datasets across mouse, marmoset and human primary motor cortex (MOp/M1) to identify 45 conserved t-types including 24 GABAergic types within a consensus cross-species taxonomy.", "title": null, "cite_key": "Braininitiativecellcensusnetworkbiccn2021", "evidence": "Cross-species snRNA-seq integration of MOp/M1 yielded 45 conserved t-types; CGE-derived subclasses (Lamp5, Sncg, Vip) preserved across all three species; human cell-type taxonomy 127 t-types, marmoset 94 t-types.", "effect_size": null, "text_access": "fulltext", "study_system": "mouse + marmoset + human MOp/M1; snRNA-seq + MERFISH + epigenomic", "target_section": "section_02", "_source_cluster": "cluster_01_molecular_taxonomy", "replication_status": "replicated", "_source_cluster_index": 11, "claim_source_sentence": "To establish a consensus classification of MOp and M1 cell types among mouse, human and marmoset, we integrated snRNA-seq datasets across species and identified 45 conserved t-types, including 24 GABAergic." }- source_refs
[ "paper:paper-pm-34616075" ]
- evidence_refs
[ { "ref": "paper:paper-pm-34616075" } ]- source_policy
{ "mode": "public_source_pointer_with_short_context", "notes": [ "Local review repositories are read-only inputs.", "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose." ], "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c", "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP" }