Details

scope
Mouse somatosensory cortex; layer-1 fluorobead retrograde tracing; quantitative laminar counts of labeled neurons
section_id
section_04
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_04_evidence_package.json
effect_size
L2/3: 40%; L5a: 18%; L5b: 11%; L4: 5%; L6a: 1%; L6b: 13%; L1: 13%.
review_repo
ComputationalReviewRecurrence
section_ref
wiki_page:computationalreviewrecurrence-04-translaminar
source_kind
review_finding
source_path
evidence/section_04_evidence_package.json
study_system
Mouse somatosensory cortex; layer-1 fluorobead retrograde tracing; quantitative laminar counts of labeled neurons
section_title
4. Translaminar excitatory loops in mouse — L4→L2/3→L5→L6→L4 within the column; asymmetry of forward and backward intracortical projections
evidence_summary
Retrograde tracing with fluorobeads from layer 1 in mouse S1, quantification of laminar origins at 140 µm and at the application center.
review_bundle_ref
analysis_bundle:ab-d9c479db9be9
replication_status
single_study
review_package_ref
analysis_bundle:ab-d9c479db9be9
source_artifact_ref
wiki_page:computationalreviewrecurrence-04-translaminar
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_04_evidence_package.json
commit_sha
79ce062d54a924ce05953ec90aa9d26044d2b48f
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence
Raw fields (6)
claim_text
In mouse S1, neurons retrogradely labelled by fluorobeads injected 140 µm from a layer-1 application site distribute across all layers with the largest contributions from L2/3 (40%), L5a (18%), L5b (11%) and L6b (13%), while L4 (5%) and L6a (1%) contribute little — quantifying the laminar origin of local L1 input.
raw_fields
{
  "n": 6,
  "doi": "10.1093/cercor/bhad371",
  "claim": "In mouse S1, neurons retrogradely labelled by fluorobeads injected 140 µm from a layer-1 application site distribute across all layers with the largest contributions from L2/3 (40%), L5a (18%), L5b (11%) and L6b (13%), while L4 (5%) and L6a (1%) contribute little — quantifying the laminar origin of local L1 input.",
  "cite_key": "Ledderose2023",
  "evidence": "Retrograde tracing with fluorobeads from layer 1 in mouse S1, quantification of laminar origins at 140 µm and at the application center.",
  "effect_size": "L2/3: 40%; L5a: 18%; L5b: 11%; L4: 5%; L6a: 1%; L6b: 13%; L1: 13%.",
  "text_access": "fulltext",
  "study_system": "Mouse somatosensory cortex; layer-1 fluorobead retrograde tracing; quantitative laminar counts of labeled neurons",
  "argument_role": "supporting",
  "replication_status": "single_study",
  "claim_source_sentence": "At 140 microns from the center of the application site, we found the highest uptake of fb in L2/3 (40% of all fb-labeled neurons in n = 6 sections from n = 6 mice) and in L5 (L5a: 18%, L5b: 11%). L4 and L6a had a smaller percentage of labeled neurons (L4: 5%, L6a: 1%), and L6b had 13% of fb-labeled neurons.",
  "source_provenance_status": "ok",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": "L4 and L6a had a smaller percentage of labeled neurons (L4: 5%, L6a: 1%), and L6b had 13% of fb-labeled neurons."
}
source_refs
[
  "paper:paper-189d92c83cf0"
]
source_span
At 140 microns from the center of the application site, we found the highest uptake of fb in L2/3 (40% of all fb-labeled neurons in n = 6 sections from n = 6 mice) and in L5 (L5a: 18%, L5b: 11%). L4 and L6a had a smaller percentage of labeled neurons (L4: 5%, L6a: 1%), and L6b had 13% of fb-labeled neurons.
evidence_refs
[
  {
    "ref": "paper:paper-189d92c83cf0"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}

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